Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Re: [galaxy-user] Inquiring by Nate Coraor (nate@bx...
51
by Nate Coraor (nate@bx...
Fw: Re: tool of installing tool shed repositories by ngsflow@hygenomics.c...
0
by ngsflow@hygenomics.c...
tool of installing tool shed repositories by ngsflow@hygenomics.c...
0
by ngsflow@hygenomics.c...
Installing toolshed repositories with set_environment dependency by S.D. Hiltemann
17
by Peter Cock
What to do with toolshed tools that get stuck "Installing" by iracooke
12
by Björn Grüning
Tool XML form building bug with <options from_data_table="..."> ? by Jennifer Jackson
2
by damion@learningpoint...
Workflows with multiple editors by Eric Rasche
3
by John Chilton
browse directories on galaxy server by David Hoover
2
by Hans-Rudolf Hotz
User activations by jordi-2
1
by Martin Čech
November 2013 Galaxy Update Newsletter by Dave Clements-2
0
by Dave Clements-2
Running functional tests is too slow by Peter Cock
5
by Peter Cock
Filtering number of outputs with a conditional by Alexandre Loywick
3
by Peter Cock
Blastdb and blastdbp datatypes not enforced by cganote@iu.edu
2
by cganote@iu.edu
Workflows with <param type="data" multiple="true" ...> by Peter Cock
2
by Peter Cock
Tool refuses to appear in Toolshed package contents by Lukasse, Pieter
16
by Lukasse, Pieter
How we found the filenames of all of the Galaxy datasets by Yaron de Leeuw
1
by Hans-Rudolf Hotz
Tabular data not displaying in main panel by Peter Cock
20
by Peter Cock
Problem With Galaxy by Caitlin Grube
1
by Adam Brenner
cloning Galaxy cluster on cloud Amazon EC2 by Manisha Sapre
7
by Dannon Baker-2
Bam File by Arshad Rafiq
1
by Björn Grüning
Why are Custom Builds disabled when by Peter van Heusden
1
by Jeremy Goecks
Upload via URL returns empty output by Nikos Sidiropoulos
0
by Nikos Sidiropoulos
trackster: missing graphs for large number of contigs by Thomas
3
by Jeremy Goecks
Galaxy and ProFTP by Jurgens
0
by Jurgens
pass regular expression by Jun Fan
3
by Björn Grüning
toolshed contact not working (varscan) by Geert Vandeweyer-4
1
by John Chilton
Toolshed reset all repository metadata by Guest, Simon
3
by Greg Von Kuster
Defining $GALAXY_CPUS for use in tool wrappers by Peter Cock
11
by Peter Cock
Re: Tool Shed Tests failing with sniffer/ftype problem by Peter Cock
7
by Dave Bouvier
Re: SeqPrep wrapper? by Lionel Guy
1
by Lionel Guy
jobid exception by Rémy Dernat
6
by Rémy Dernat
Empty or 'no peek' output. by Luobin Yang
0
by Luobin Yang
Associate jobs to a Project ID by Jean-Francois Payott...
1
by John Chilton
No "Upload files to repository" button by Stewart, Andrew
1
by Stewart, Andrew
Test Tool Shed - tests failing in subprocess / sniff by Peter Cock
1
by Greg Von Kuster
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