Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
tool_dependencies.xml <action type="download_by_url"> regression? by Peter Cock
1
by Björn Grüning-3
database I/O error by Nikhil Joshi-2
1
by Federico Zambelli
Uploads stalling on local Galaxy installation by Tim Booth
9
by Tim Booth
Test Toolshed Biopython package dependency & NumPy by Peter Cock
18
by Peter Cock
RFC: Streamlined Uploading by John Chilton
2
by Peter Cock
display at third party tools error by TerryYeh
0
by TerryYeh
Share workflows for all users by Pandorin
1
by Jeremy Goecks
Workflow step dependencies by Eric Rasche
2
by Eric Rasche
Main tool shed is running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Installation on cluster by Jurgens
1
by John Chilton
worflow editor is slow with a large amount of steps by Björn Grüning-3
4
by James Taylor
page editor problem when saving Chinese by lardo
3
by lardo
Input parameter validation dependent on another parameter? by Peter Cock
4
by Peter Cock
Error on Get Data by Jurgens
0
by Jurgens
impersonation - history - error? by vazovn
0
by vazovn
Functional tests results in Invalid HTTP return code 404/500, allowed codes: 200 by swp
5
by swp
Zero padding corruption using galaxy with torque on AFS by Renato Alves
1
by Renato Alves
file download returns empty file or webpage error by UMD Bioinformatics
0
by UMD Bioinformatics
RFC: remove trailing semicolons from command line -> Broken bowtie2_wrapper on some SGE systems by Björn Grüning
18
by Peter Cock
Re: Job splitting by Björn Grüning-3
0
by Björn Grüning-3
Deploying LOC files for tool built-in data during a tool installation by Jean-Frédéric Berthe...
10
by Daniel Blankenberg
Problem configuring Galaxy with an Apache proxy by Erwan Delage
2
by Eric Rasche
bug in handling sessions by vazovn
2
by vazovn
random_lines_two_pass.py slow by Ido Tamir
0
by Ido Tamir
Interact with running job? by Jonas Hagberg
2
by Jonas Hagberg
Integrate Galaxy workflow as a tool in Galaxy by shenwiyn
0
by shenwiyn
Apache and Galaxy by UMD Bioinformatics
1
by UMD Bioinformatics
Re: [galaxy-user] Need your helps about Galaxy by James Taylor
7
by Jennifer Jackson
/dev/xvda1 filling up when downloading large files via ftp by StanW
4
by StanW
Can not find hg_g1k_v37.fa. by shenwiyn
4
by Jennifer Jackson
Default values for repeat sections by Eric Rasche
4
by Eric Rasche
Consistently denied server access by Rhea Datta
4
by Rhea Datta
colaborativ pages by philippe
1
by John Chilton
Barcode splitter configuration by UMD Bioinformatics
0
by UMD Bioinformatics
launching CloudMan 2.0 on AWS by Vipin TS
2
by Vipin TS
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