Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Solenopsis invicta genome by patrick.joye
1
by Jennifer Jackson
masthead and history lost when embedding Galaxy in iframe by andy
1
by Carl Eberhard
Error when running paster directly by Renato Alves
1
by James Taylor
Unicode in tool stderr crashing galaxy? by Guest, Simon
4
by Guest, Simon
Frames issue with tool shed README links? by Peter Cock
1
by Greg Von Kuster
UCSC Main table browser invalid link by Gonsky, Rivkah, Ph.D
1
by Nate Coraor (nate@bx...
Dealing with cluster job preemption by hackdna
0
by hackdna
FASTQ converter not working by James Tarver
1
by Daniel Blankenberg
Visualizations broken after Aug. 12 update by Liisa Koski-2
2
by Liisa Koski-2
unable to import run or save-to-file published workflow after galaxy upgrade by Jennifer Jackson
0
by Jennifer Jackson
Filter and Sort Errors by Mersee Madison-Villa...
0
by Mersee Madison-Villa...
Intergrate custom script with multiple outputs by UMD Bioinformatics
5
by cjav
Launching CloudMan in Other AWS Regions than US East by Ryota Yamanaka
2
by Ryota Yamanaka
2 RNAseq files in Main queue 1 week to map w/Top hat by Theresa Stueve
1
by Jennifer Jackson
Migrating database from development back to stable? by Guest, Simon
1
by James Taylor
Path problems with installation on the Test ToolShed? by Peter Cock
2
by Peter Cock
Galaxy code run on main Tool Shed vs Test Tool Shed? by Peter Cock
5
by Dave Bouvier
Adding a tool to Galaxy Main Server by Hamid Reza Hassanzad...
1
by Jennifer Jackson
Dynamic job runner not being dispatched for a tool by cganote@iu.edu
3
by cganote@iu.edu
GA file format documentation by takadonet
3
by Dannon Baker-2
error checking active jobs : KeyError: 'destination' by cganote@iu.edu
0
by cganote@iu.edu
fastx_toolkit not recognizing fastq files by UMD Bioinformatics
2
by UMD Bioinformatics
Re: Functional tests broken, NameError: global name 'db_path' is not defined by UMD Bioinformatics
0
by UMD Bioinformatics
Intermittent workflow errors with local galaxy running postgresql 9.3 by christtm1
1
by Björn Grüning
multiple input files by Ulf
8
by John Chilton
Re: [galaxy-user] slow Galaxy server by Peter Cock
0
by Peter Cock
Functional tests broken, NameError: global name 'db_path' is not defined by Peter Cock
3
by Peter Cock
Please save these dates! GCC2014: June 30 - July 2 by Dave Clements-2
0
by Dave Clements-2
URL problem by Jennifer Jackson
1
by Kucukural, Alper
Toolshed Collaboration Issues by Lance Parsons
3
by Björn Grüning
Slice bam by jean_jasinski
1
by jean_jasinski
Galaxy STARTUP ERROR! by Giovanni Pascarella
1
by Dannon Baker-2
Dynamic data library by Cole, Nathan (NIH/NC...
5
by Hans-Rudolf Hotz
how to generate .len file for custom genome? (trackster error) by gumboy
1
by Hans-Rudolf Hotz
Test post, please ignore by Guest, Simon
0
by Guest, Simon
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