Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
configuring auth_ldap for galaxy by Iry Witham
4
by Iry Witham
Local Galaxy Install - Debug Report FROM address as Admin and not User? by Adam Brenner
3
by Martin Čech
2 RNAseq files in queue to map w/Tophat in Main since last Thursday, please advise by Theresa Stueve
0
by Theresa Stueve
Download URL not accepted in tool_dependencies.xml by Joachim Jacob
10
by Joachim Jacob
Problem with get data/uploading file. by Luobin Yang
1
by Hans-Rudolf Hotz
RNAseq Map with Top Hat job in queue 4 days, 'waiting to run" by Theresa Stueve
1
by Jennifer Jackson
bwa indexing not automatic? by Jennifer Jackson
1
by Joshua Orvis
How can I get a txt output file from R by Ramon Tiburski
7
by Ramon Tiburski
Test Toolshed Biopython package dependency Atlas fails to install (Was: Re: UnboundLocalError: local variable 'prior_installation_required' referenced before assignment) by cjav
29
by John Chilton
October Galaxy Update Newsletter is out by Dave Clements-2
0
by Dave Clements-2
pbkdf2 encryption - disabling does not work by galapah
5
by Martin Čech
problems with toolshed package update process by Lukasse, Pieter
2
by Lukasse, Pieter
Messed up a tool installation from a local toolshed by Joachim Jacob-2
6
by Joachim Jacob
puzzle: tool result always "set dataset state to ERROR" by Rui Wang
4
by Peter Cock
2 RNAseq jobs in queue to map with Tophat > 48 hours in Galaxy Main by Theresa Stueve
0
by Theresa Stueve
Free Training (Boston): Analyzing NGS Data with Galaxy by Anushka Brownley
0
by Anushka Brownley
Bug: Galaxy Tool Shed dependency communication via HTTP GET method by Richard Burhans
4
by Greg Von Kuster
Partial test information on (Test) Tool Shed by Peter Cock
0
by Peter Cock
pass user groups to dynamic job runner by Vandeweyer Geert
5
by Nicola Soranzo
dead link by Kevin Viken
0
by Kevin Viken
Access to history_id from tool config XML by Tim Dreszer
4
by Tim Dreszer
Limit number of Jobs to Trinity by Carlos Canchaya
5
by Hans-Rudolf Hotz
pgcleanup problem by Eric Kuyt
2
by Eric Kuyt
Need help setting up galaxy with swift object store. by Varun Mittal
0
by Varun Mittal
Visualisation of VCF files in trackster by Ulf
3
by Jeremy Goecks
cuffdiff wrapper not synchronized with cuffdiff version by karenchait
10
by Curtis Hendrickeduso...
Want faster dataset import by Ted Goldstein
1
by Dannon Baker-2
Local Galaxy Install - Multiple Input Files for Workflow Missing? by Adam Brenner
1
by Dannon Baker-2
Dependencies for complex datatypes by Peter Cock
1
by Peter Cock
error in 2013_08_12 DevNewsBriefs by Curtis Hendrickeduso...
1
by Nicola Soranzo
Patch for deseq_and_sam2counts Galaxy wrapper by Guest, Simon
0
by Guest, Simon
Tool Shed: get_readme_files bug by Richard Burhans
7
by Greg Von Kuster
fasq groomer pallelel did not install automatically into local instance by Di Nguyen
0
by Di Nguyen
Re: Need your helps about Galaxy by Lei Yan
1
by Adam Brenner
ImportError: No module named paramiko by Peter Cock
5
by Peter Cock
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