Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Repository tool dependencies and virtualenv install by cjav
12
by cjav
cluster error by philippe
0
by philippe
How to make a Tool Shed private? by swp
2
by swp
my history not visible by Robert Jackman
1
by Peter Cock
Grant authority missing when create new repository on Tool Shed by Peter Cock
1
by Greg Von Kuster
Regarding Jellyfish or other k-mer analysis software by JohanSchedin
0
by JohanSchedin
[GSoC2013] Final Update! by saketkc
0
by saketkc
History will not load by Maria Hoffman
0
by Maria Hoffman
(no subject) by Maria Hoffman
0
by Maria Hoffman
testtoolshed.g2.bx.psu.edu not compatible with galaxy-central stable by Richard Burhans
4
by Björn Grüning
Using tool_dependencies.xml files directly via Galaxy API by Peter Cock
0
by Peter Cock
UnboundLocalError: local variable 'prior_installation_required' referenced before assignment by cjav
8
by Björn Grüning
Part Time Job opening at GenePeeks by Adam Cohn
0
by Adam Cohn
Towards Galaxy Linux (not) ? [was [RFC] Storing of tarballs and patches for tool_dependencies to enable reproducibility] by Guest, Simon
4
by Björn Grüning
August 2013 Galaxy Update Newsletter is out by Dave Clements-2
5
by Dave Clements-2
UnicodeDecodeError - suggested note regarding UTF8 encoding in postgres databases by Guest, Simon
0
by Guest, Simon
Re: Mercurial updates not working - caused by http_proxy? by Guest, Simon
0
by Guest, Simon
'galaxy-api-tools' project by cjav
1
by cjav
which galaxy to use? by Jennifer Jackson
1
by peter
tools in multiple sections can disappear from integrated_tool_panel.xml by Richard Burhans
0
by Richard Burhans
Made some additions by Matthew Paul
2
by Peter Cock
Re: R-environment Patch [was: [galaxy-iuc] RFC: R, RPy2, DESeq2 example wrapper] by John Chilton
1
by Björn Grüning-3
no access to ftp on email change by Vandeweyer Geert
0
by Vandeweyer Geert
workflow issues in local Galaxy.... by Nikhil Joshi-2
4
by Vandeweyer Geert
Issue with Bioblend's run_workflow import_inputs_to_history by cjav
0
by cjav
[RFC] Storing of tarballs and patches for tool_dependencies to enable reproducibility by Björn Grüning-3
6
by John Chilton
Number of Threads Tophat2/Bowtie2 by rkuo
1
by Peter Cock
tool_dependencies.xml format by James Taylor
5
by Björn Grüning-3
[GSoC2013] Update by saketkc
0
by saketkc
CuffDiff read group tracking by Matthew Paul
1
by Jeremy Goecks
Can the API add elements to a repeat parameter? by cjav
0
by cjav
CILogon for Galaxy by Yu (Marie) Ma
0
by Yu (Marie) Ma
Geek question re HTTP POST and Galaxy by Ted Goldstein
4
by Jeremy Goecks
tools installed from a toolshed repository displayed in an arbitrary order by Yulia.Arzhaeva
2
by Ido Tamir
Resolved toolshed mercurial authentication issue, public name change issue remains by Guest, Simon
1
by Björn Grüning
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