Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
no access to ftp on email change by Vandeweyer Geert
0
by Vandeweyer Geert
workflow issues in local Galaxy.... by Nikhil Joshi-2
4
by Vandeweyer Geert
Issue with Bioblend's run_workflow import_inputs_to_history by cjav
0
by cjav
[RFC] Storing of tarballs and patches for tool_dependencies to enable reproducibility by Björn Grüning-3
6
by John Chilton
Number of Threads Tophat2/Bowtie2 by rkuo
1
by Peter Cock
tool_dependencies.xml format by James Taylor
5
by Björn Grüning-3
[GSoC2013] Update by saketkc
0
by saketkc
CuffDiff read group tracking by Matthew Paul
1
by Jeremy Goecks
Can the API add elements to a repeat parameter? by cjav
0
by cjav
CILogon for Galaxy by Yu (Marie) Ma
0
by Yu (Marie) Ma
Geek question re HTTP POST and Galaxy by Ted Goldstein
4
by Jeremy Goecks
tools installed from a toolshed repository displayed in an arbitrary order by Yulia.Arzhaeva
2
by Ido Tamir
Resolved toolshed mercurial authentication issue, public name change issue remains by Guest, Simon
1
by Björn Grüning
Conditional and validator: refresh_on_change without validation by Tim Kahlke
1
by Jeremy Goecks
Circumvent "Show all" button by Gromobir
2
by Gromobir
toolshed tool versions and tool panel by Lukasse, Pieter
1
by Dave Bouvier
Viewing old nightly test results on the (Test) Tool Shed by Peter Cock
1
by Peter Cock
Creating Galaxy Admin / Local Install Mailing List - Updates? by Adam Brenner
2
by Dave Clements-2
(Test) Tool Shed rending bug with non-ASCII characters in README.rst by Peter Cock
4
by Peter Cock
Re: HOWTO for making new toolshed package by Greg Von Kuster
9
by Lukasse, Pieter
Scaling and hardware requirements by Nikos Sidiropoulos
7
by Gerald Bothe
PATH and local jobs by Ryan Davis
3
by James Taylor
Reserved variables in param tags by Kohler Manuel
1
by John Chilton
Problem with installing MAF cached dataset by Leon Mei
4
by Leon Mei
Stable Galaxy for local install by test galaxy
7
by Hans-Rudolf Hotz
Deseq2 wrapper question by Rui Wang
12
by Ross-2
tool shed can't install via admin user by Adhemar
3
by Adhemar
workflow_execute.py limitation? by Hakeem Almabrazi
0
by Hakeem Almabrazi
Proper way of using bioblend.galaxy.workflows.run_workflow() {'<input>': {'id': <encoded dataset ID>, 'src': '[ldda, ld, hda]'} by cjav
0
by cjav
'DECLARE CURSOR ... FOR UPDATE/SHARE is not supported' by hogart
6
by hogart
ZFS storage recommendations by Joachim Jacob
6
by Joachim Jacob
phylib file type by Ulf
2
by Ulf
How to configure and set up the Circos on my local Galaxy? by shenwiyn
2
by shenwiyn
Mail is not configured for this Galaxy instance. by shenwiyn
7
by shenwiyn
Bismark error by Nikos Sidiropoulos
6
by Nikos Sidiropoulos
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