Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
"from galaxy.datatypes.data import Data" import error by Björn Grüning
0
by Björn Grüning
Tool-shed: Migration scripts vs direct install by Shantanu Pavgi
0
by Shantanu Pavgi
Error resolving Emboss tool dependencies by Shantanu Pavgi
8
by Shantanu Pavgi
options from_dataset evaluation in workflow by Wolfgang Maier
1
by Jeremy Goecks
workflow_execute.py failing! by Hakeem Almabrazi
0
by Hakeem Almabrazi
[GSoC2013] Week 6 Update by saketkc
2
by Philippe Veber
Lost in tool dependencies by Lionel Guy
8
by Björn Grüning-3
Tool's toolshed page does not get updated after uploading new version by Joachim Jacob
1
by Joachim Jacob
Bug in toolshed: changing public name breaks repo path by Guest, Simon
8
by Greg Von Kuster
no module named eggs Error by Hakeem Almabrazi
0
by Hakeem Almabrazi
Re: [galaxy-user] version_command tag problem by Jennifer Jackson
0
by Jennifer Jackson
Re: [galaxy-user] NoClassDefFoundError in Picard Paired Read Mate Fixer by Jennifer Jackson
0
by Jennifer Jackson
ProFTPD Config Issues by panza1370
3
by panza1370
tool-shed migration - dist version still shown in UI by Shantanu Pavgi
0
by Shantanu Pavgi
iRODS integration by Zeeshan Ali Shah
4
by Zeeshan Ali Shah
Trackster: alignment is not showing up as 'squish' by Joachim Jacob
2
by Jeremy Goecks
For constructing workflow of workflows by patra
0
by patra
Mercurial updates not working by Alistair Chilcott
1
by Guest, Simon
Typo in Wiki Page - Purge History and Datasets by Adam Brenner
1
by Dave Bouvier
about Galaxy by Jennifer Jackson
0
by Jennifer Jackson
Accessing parameter defined within conditional from option filter by Peter Briggs
0
by Peter Briggs
Updating Galaxy Instance by rkuo
3
by cjav
Re: [galaxy-user] Questions regarding Galaxy Tool XML File by Jeremy Goecks
2
by Jeremy Goecks
[GSoC2013] Week 9,10,11 Update by saketkc
0
by saketkc
Postgresql database cleaning by Christophe Antoniews...
4
by Christophe Antoniews...
Re: [galaxy-user] About tool classify in the tool box panel by Björn Grüning
0
by Björn Grüning
URL problem by Jennifer Jackson
2
by Kucukural, Alper
August 2013 Galaxy Update Newsletter is out by Dave Clements-2
0
by Dave Clements-2
Local installation: Uploading fastq file takes ages - why? by boazsh
2
by boazsh
adding new genome to local galaxy instance by Vipin TS
3
by Vipin TS
How to get the import of BAM files to create its index on the cluster by thondeboer
0
by thondeboer
Better packaging for toolshed binaries by Guest, Simon
4
by John Chilton-2
No zebrafish Zv9 build by Smith, Tiffany L
1
by Jennifer Jackson
Local Instance and current website are not the same by Tevfik Hamdi Kitapci
2
by Ross-2
Patch for RPy for R 3.0.1 by Guest, Simon
0
by Guest, Simon
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