Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Re: [galaxy-user] Questions regarding Galaxy Tool XML File by Jeremy Goecks
2
by Jeremy Goecks
[GSoC2013] Week 9,10,11 Update by saketkc
0
by saketkc
Postgresql database cleaning by Christophe Antoniews...
4
by Christophe Antoniews...
Re: [galaxy-user] About tool classify in the tool box panel by Björn Grüning
0
by Björn Grüning
URL problem by Jennifer Jackson
2
by Kucukural, Alper
August 2013 Galaxy Update Newsletter is out by Dave Clements-2
0
by Dave Clements-2
Local installation: Uploading fastq file takes ages - why? by boazsh
2
by boazsh
adding new genome to local galaxy instance by Vipin TS
3
by Vipin TS
How to get the import of BAM files to create its index on the cluster by thondeboer
0
by thondeboer
Better packaging for toolshed binaries by Guest, Simon
4
by John Chilton-2
No zebrafish Zv9 build by Smith, Tiffany L
1
by Jennifer Jackson
Local Instance and current website are not the same by Tevfik Hamdi Kitapci
2
by Ross-2
Patch for RPy for R 3.0.1 by Guest, Simon
0
by Guest, Simon
tool not runing in workflow by Thomas
2
by Thomas
Connecting to new Galaxy Cloudman by FTP by Mohammad Heydarian
4
by Enis Afgan
Cloudman database issue (?) by Mohammad Heydarian
2
by Enis Afgan-2
Galaxy CloudMan release by Enis Afgan-2
5
by Enis Afgan-2
RuntimeError: maximum recursion depth exceeded while calling a Python object by Knowledge
3
by Jeremy Goecks
Select multiple and conditional by Tim Kahlke
1
by Jeremy Goecks
New misc tool shed wish list by Björn Grüning-3
1
by Greg Von Kuster
Manhattan/qq plots by Thomas
3
by Thomas
ncbi_blast_plus - tool shed updates by Shantanu Pavgi
1
by Björn Grüning
Login hook by Maddhi, Srinivas
2
by Maddhi, Srinivas
TS API installation broken by Björn Grüning-3
3
by Björn Grüning
manage toolshed repos crashing by Robert Baertsch-2
1
by Greg Von Kuster
Why does my trackster complain about not being able to display BED files? by thondeboer
11
by thondeboer
Galaxy in the cloud.... some questions by Alistair Chilcott
1
by Dannon Baker-2
Plugins by Michael E. Cotterell
3
by Michael E. Cotterell
How to send a file from galaxy to an external URL by Delphine Lariviere-2
0
by Delphine Lariviere-2
How to retrieve the current job ID by wbflame
1
by Jeremy Goecks
Stopping jobs by deleting history via API by hackdna
1
by hackdna
developing a tool which could encapsulate any tool by Ketan Maheshwari
1
by Peter Cock
Passing user_email to a data source by Anthony Bretaudeau
3
by Anthony Bretaudeau
Galaxy Release Cycle Length by Dave Clements-2
5
by Leon Mei
error installing dependency for tool shed repository. by Curt Palm-2
4
by Dave Bouvier
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