Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
tool not runing in workflow by Thomas
2
by Thomas
Connecting to new Galaxy Cloudman by FTP by Mohammad Heydarian
4
by Enis Afgan
Cloudman database issue (?) by Mohammad Heydarian
2
by Enis Afgan-2
Galaxy CloudMan release by Enis Afgan-2
5
by Enis Afgan-2
RuntimeError: maximum recursion depth exceeded while calling a Python object by Knowledge
3
by Jeremy Goecks
Select multiple and conditional by Tim Kahlke
1
by Jeremy Goecks
New misc tool shed wish list by Björn Grüning-3
1
by Greg Von Kuster
Manhattan/qq plots by Thomas
3
by Thomas
ncbi_blast_plus - tool shed updates by Shantanu Pavgi
1
by Björn Grüning
Login hook by Maddhi, Srinivas
2
by Maddhi, Srinivas
TS API installation broken by Björn Grüning-3
3
by Björn Grüning
manage toolshed repos crashing by Robert Baertsch-2
1
by Greg Von Kuster
Why does my trackster complain about not being able to display BED files? by thondeboer
11
by thondeboer
Galaxy in the cloud.... some questions by Alistair Chilcott
1
by Dannon Baker-2
Plugins by Michael E. Cotterell
3
by Michael E. Cotterell
How to send a file from galaxy to an external URL by Delphine Lariviere-2
0
by Delphine Lariviere-2
How to retrieve the current job ID by wbflame
1
by Jeremy Goecks
Stopping jobs by deleting history via API by hackdna
1
by hackdna
developing a tool which could encapsulate any tool by Ketan Maheshwari
1
by Peter Cock
Passing user_email to a data source by Anthony Bretaudeau
3
by Anthony Bretaudeau
Galaxy Release Cycle Length by Dave Clements-2
5
by Leon Mei
error installing dependency for tool shed repository. by Curt Palm-2
4
by Dave Bouvier
Bismark issue by Shane Sturrock
3
by Shane Sturrock
Action type 'template_command' on galaxy-dist? by Peter Cock
28
by Greg Von Kuster
Duplicated entries in "Manage installed tool shed repositories" table by Peter Cock
6
by Björn Grüning-3
Embedding a help text in a Workflow? by Peter Cock
8
by Peter Cock
JSON error trying to update Tool Shed workflow by Peter Cock
2
by Peter Cock
Non-ascii characters in password break Galaxy login by Peter Cock
0
by Peter Cock
Workflow import is not working, KeyError: 'header_lines' by Peter Cock
6
by Peter Cock
Editing workflow - automatic update changes not saved? by Peter Cock
0
by Peter Cock
Error granting permissions on new Tool Shed repository by Peter Cock
3
by Greg Von Kuster
Workflow action summary confusing, repeats "Hide this dataset" by Peter Cock
1
by Dannon Baker-2
Troubleshooting file uploads (to Data Library) by Clare Sloggett
3
by Clare Sloggett
DESeq for Galaxy by sridhar srinivasan
13
by Ross-2
Tool Shed upload/migration revision checking bug? by Peter Cock
5
by Björn Grüning-3
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