Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Bismark issue by Shane Sturrock
3
by Shane Sturrock
Action type 'template_command' on galaxy-dist? by Peter Cock
28
by Greg Von Kuster
Duplicated entries in "Manage installed tool shed repositories" table by Peter Cock
6
by Björn Grüning-3
Embedding a help text in a Workflow? by Peter Cock
8
by Peter Cock
JSON error trying to update Tool Shed workflow by Peter Cock
2
by Peter Cock
Non-ascii characters in password break Galaxy login by Peter Cock
0
by Peter Cock
Workflow import is not working, KeyError: 'header_lines' by Peter Cock
6
by Peter Cock
Editing workflow - automatic update changes not saved? by Peter Cock
0
by Peter Cock
Error granting permissions on new Tool Shed repository by Peter Cock
3
by Greg Von Kuster
Workflow action summary confusing, repeats "Hide this dataset" by Peter Cock
1
by Dannon Baker-2
Troubleshooting file uploads (to Data Library) by Clare Sloggett
3
by Clare Sloggett
DESeq for Galaxy by sridhar srinivasan
13
by Ross-2
Tool Shed upload/migration revision checking bug? by Peter Cock
5
by Björn Grüning-3
Biopython dependency on matplotlib by Peter Cock
5
by Björn Grüning-3
Implementing blend4j by Eric Kuyt
5
by John Chilton
Apache authentication UCSC error by Shane Sturrock
1
by Shane Sturrock
Name of downloaded file by Alexandre
1
by boazsh
Integration with remote SAAS by Joe Stubbs
0
by Joe Stubbs
Bullet points not showing in README.rst on Tool Shed by Peter Cock
1
by Greg Von Kuster
Error when I will set "set at runtime" in a workflow by Ramon Tiburski
0
by Ramon Tiburski
Getting data from a database to create a dynamic combo box by Ramon Tiburski
8
by Ramon Tiburski
Licensing Galaxy workflows; are they software or documents? by Peter Cock
6
by Peter Cock
Problem when I submit 'gatk_wrapper.py' task with my job scheduling system arranged on my sever. by Wei Liu
1
by Wei Liu
OSError: [Errno 5] Input/output error by rkuo
2
by Hans-Rudolf Hotz
Showing images in README.rst on Tool Shed by Peter Cock
2
by Peter Cock
Note about running functional tests. by Dave Bouvier
5
by Peter Cock
how to add settings of TMPDIR=/scratch for sge/drmaa in universe_wsgi.ini by Jennifer Jackson
7
by tin h
Tool Shed error: AttributeError: 'NoneType' object has no attribute 'status' by Björn Grüning-3
1
by Greg Von Kuster
functional test changing datasets by Thomas
2
by Dave Bouvier
disable PBKDF2, revert to SHA1 by Ulf
1
by James Taylor
upload file not functioning in local installation galaxy by Yinan Wan
3
by Hans-Rudolf Hotz
Exporting Tool Shed revision does not work anymore by Björn Grüning-3
2
by Dave Bouvier
Sample & test-data in tools & workflows by Peter Cock
0
by Peter Cock
Is there a way to install a tool from toolshed in cloudman without using commands? by antoprajkumar
7
by antoprajkumar
Tool Shed repository install directory by jeanre
1
by Björn Grüning
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