Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Samtools 0.1.19 upgrade by Björn Grüning
1
by Greg Von Kuster
error checking active jobs : KeyError: 'destination' by Geert Vandeweyer-3
2
by Geert Vandeweyer-4
Picard Paired Read Mate Fixer Error with picard_wrapper.py by Nicolas Quizon
0
by Nicolas Quizon
tool shed differences local vs web by Benjamin Schuster-Bo...
3
by Benjamin Schuster-Bo...
Admin:Server:View data tables registry Internal Server Error by raramayo
0
by raramayo
Multiple output files do not appear in history by Christoph Malisi
2
by Carl Eberhard
Job listing exception by Kyle Ellrott
2
by Carl Eberhard
Display data in browser by Gromobir
1
by Carl Eberhard
Searching on Tool Shed gives multiple revisions by Peter Cock
2
by Peter Cock
Test Tool Shed down? by Lionel Guy
4
by Peter Cock
GATK - Depth of Coverage Error by Nikvailo
0
by Nikvailo
edgeR Tool Shed by rkuo
1
by Ross-2
Setting torque queues by Scott Hazelhurst
2
by cjav
Upstart script to manage a multi instance load balanced installation by Seth Sims
4
by Seth Sims
Is there a way to re-run a failed job and check the "re-associated" checkbox from the API? by thondeboer
0
by thondeboer
Jobs remain in queue until restart by thondeboer
7
by thondeboer
Galaxy database check script by Graham Etherington
1
by Dannon Baker-2
Fwd: Map with BWA results in correpted SAM file by Moritz Juchler
3
by Vandeweyer Geert
outputs label attribute by Jun Fan
3
by Björn Grüning-3
Tool params passed to python dynamic job runner by cganote@iu.edu
4
by Peter Cock
adding reference genome by Vijay Kumar
1
by Jennifer Jackson
ENA galaxy import link broken? by Andrew Warren
0
by Andrew Warren
Cloudman could not determine the version of Tophat and cufflinks. by antoprajkumar
2
by antoprajkumar
Urgent Help Required.....Fastq file by Vengurlekar, Priyank...
0
by Vengurlekar, Priyank...
Join the HOMER Galaxy wrapper development! by Björn Grüning-3
0
by Björn Grüning-3
Running Jobs: by Jurgens
0
by Jurgens
Galaxy behind a authenticated proxy Server by Jurgens
1
by Timothy Carr
scripting galaxy installs / toolshed by Ido Tamir
2
by Ross-2
Error when running test by Jurgens
0
by Jurgens
Galaxy Distribution Aug 12, 2013 by Jennifer Jackson
0
by Jennifer Jackson
Public production instance page is not loading properly with latest stable release by Vipin TS
0
by Vipin TS
How can I shorten refresh time? by Ramon Tiburski
0
by Ramon Tiburski
[GSoC2013] Week 7 and Week 8 Update by saketkc
0
by saketkc
Adding GATK tools to Galaxy Cloudman by Iry Witham
3
by Peter Cock
Error at initialization of module heapycTraceback / Last sources of Galaxy by Sarah Maman-2
1
by Dannon Baker-2
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