Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Upstart script to manage a multi instance load balanced installation by Seth Sims
4
by Seth Sims
Is there a way to re-run a failed job and check the "re-associated" checkbox from the API? by thondeboer
0
by thondeboer
Jobs remain in queue until restart by thondeboer
7
by thondeboer
Galaxy database check script by Graham Etherington
1
by Dannon Baker-2
Fwd: Map with BWA results in correpted SAM file by Moritz Juchler
3
by Vandeweyer Geert
outputs label attribute by Jun Fan
3
by Björn Grüning-3
Tool params passed to python dynamic job runner by cganote@iu.edu
4
by Peter Cock
adding reference genome by Vijay Kumar
1
by Jennifer Jackson
ENA galaxy import link broken? by Andrew Warren
0
by Andrew Warren
Cloudman could not determine the version of Tophat and cufflinks. by antoprajkumar
2
by antoprajkumar
Urgent Help Required.....Fastq file by Vengurlekar, Priyank...
0
by Vengurlekar, Priyank...
Join the HOMER Galaxy wrapper development! by Björn Grüning-3
0
by Björn Grüning-3
Running Jobs: by Jurgens
0
by Jurgens
Galaxy behind a authenticated proxy Server by Jurgens
1
by Timothy Carr
scripting galaxy installs / toolshed by Ido Tamir
2
by Ross-2
Error when running test by Jurgens
0
by Jurgens
Galaxy Distribution Aug 12, 2013 by Jennifer Jackson
0
by Jennifer Jackson
Public production instance page is not loading properly with latest stable release by Vipin TS
0
by Vipin TS
How can I shorten refresh time? by Ramon Tiburski
0
by Ramon Tiburski
[GSoC2013] Week 7 and Week 8 Update by saketkc
0
by saketkc
Adding GATK tools to Galaxy Cloudman by Iry Witham
3
by Peter Cock
Error at initialization of module heapycTraceback / Last sources of Galaxy by Sarah Maman-2
1
by Dannon Baker-2
Quoted paths in universe_wsgi.ini - configuration error? by Peter Cock
0
by Peter Cock
How to send a file from galaxy to an external URL by Delphine LARIVIERE
0
by Delphine LARIVIERE
cummerBund installation by sridhar srinivasan
2
by sridhar srinivasan
Help with installation by Jurgens
3
by Jurgens
Problems with Tophat & uploading files to Cloudman by FTP by antoprajkumar
0
by antoprajkumar
Public production instance page is not rendering properly by Vipin TS
7
by Vipin TS
Error running oasesoptimizer rev. 53e887dda799 (konradpaszkiewicz) on Galaxy fd4113962c32+ (stable) by raramayo
0
by raramayo
One small problem for experts, one giant question for me.. by Nikvailo
2
by Nikvailo
Galaxy cannot start last [server:handlerxx] by raramayo
4
by raramayo
Galaxy on cloud config issues by Anatoly Ulyanov
8
by Anatoly Ulyanov
support pbkdf2 in proftpd 1.3.5rc3 by Leon Mei
6
by Benjamin Schuster-Bo...
Cloudman - When will the symlinks be resolved ? by rssetia
6
by rssetia
job runner upload file by Jasper Jan Koehorst
1
by Nate Coraor (nate@bx...
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