Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9232)
Replies Last Post Views
Licensing Galaxy workflows; are they software or documents? by Peter Cock
6
by Peter Cock
Problem when I submit 'gatk_wrapper.py' task with my job scheduling system arranged on my sever. by Wei Liu
1
by Wei Liu
OSError: [Errno 5] Input/output error by rkuo
2
by Hans-Rudolf Hotz
Showing images in README.rst on Tool Shed by Peter Cock
2
by Peter Cock
Note about running functional tests. by Dave Bouvier
5
by Peter Cock
how to add settings of TMPDIR=/scratch for sge/drmaa in universe_wsgi.ini by Jennifer Jackson
7
by tin h
Tool Shed error: AttributeError: 'NoneType' object has no attribute 'status' by Björn Grüning-3
1
by Greg Von Kuster
functional test changing datasets by Thomas
2
by Dave Bouvier
disable PBKDF2, revert to SHA1 by Ulf
1
by James Taylor
upload file not functioning in local installation galaxy by Yinan Wan
3
by Hans-Rudolf Hotz
Exporting Tool Shed revision does not work anymore by Björn Grüning-3
2
by Dave Bouvier
Sample & test-data in tools & workflows by Peter Cock
0
by Peter Cock
Is there a way to install a tool from toolshed in cloudman without using commands? by antoprajkumar
7
by antoprajkumar
Tool Shed repository install directory by jeanre
1
by Björn Grüning
Samtools 0.1.19 upgrade by Björn Grüning
1
by Greg Von Kuster
error checking active jobs : KeyError: 'destination' by Geert Vandeweyer-3
2
by Geert Vandeweyer-4
Picard Paired Read Mate Fixer Error with picard_wrapper.py by Nicolas Quizon
0
by Nicolas Quizon
tool shed differences local vs web by Benjamin Schuster-Bo...
3
by Benjamin Schuster-Bo...
Admin:Server:View data tables registry Internal Server Error by raramayo
0
by raramayo
Multiple output files do not appear in history by Christoph Malisi
2
by Carl Eberhard
Job listing exception by Kyle Ellrott
2
by Carl Eberhard
Display data in browser by Gromobir
1
by Carl Eberhard
Searching on Tool Shed gives multiple revisions by Peter Cock
2
by Peter Cock
Test Tool Shed down? by Lionel Guy
4
by Peter Cock
GATK - Depth of Coverage Error by Nikvailo
0
by Nikvailo
edgeR Tool Shed by rkuo
1
by Ross-2
Setting torque queues by Scott Hazelhurst
2
by cjav
Upstart script to manage a multi instance load balanced installation by Seth Sims
4
by Seth Sims
Is there a way to re-run a failed job and check the "re-associated" checkbox from the API? by thondeboer
0
by thondeboer
Jobs remain in queue until restart by thondeboer
7
by thondeboer
Galaxy database check script by Graham Etherington
1
by Dannon Baker-2
Fwd: Map with BWA results in correpted SAM file by Moritz Juchler
3
by Vandeweyer Geert
outputs label attribute by Jun Fan
3
by Björn Grüning-3
Tool params passed to python dynamic job runner by cganote@iu.edu
4
by Peter Cock
adding reference genome by Vijay Kumar
1
by Jennifer Jackson
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