Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Quoted paths in universe_wsgi.ini - configuration error? by Peter Cock
0
by Peter Cock
How to send a file from galaxy to an external URL by Delphine LARIVIERE
0
by Delphine LARIVIERE
cummerBund installation by sridhar srinivasan
2
by sridhar srinivasan
Help with installation by Jurgens
3
by Jurgens
Problems with Tophat & uploading files to Cloudman by FTP by antoprajkumar
0
by antoprajkumar
Public production instance page is not rendering properly by Vipin TS
7
by Vipin TS
Error running oasesoptimizer rev. 53e887dda799 (konradpaszkiewicz) on Galaxy fd4113962c32+ (stable) by raramayo
0
by raramayo
One small problem for experts, one giant question for me.. by Nikvailo
2
by Nikvailo
Galaxy cannot start last [server:handlerxx] by raramayo
4
by raramayo
Galaxy on cloud config issues by Anatoly Ulyanov
8
by Anatoly Ulyanov
support pbkdf2 in proftpd 1.3.5rc3 by Leon Mei
6
by Benjamin Schuster-Bo...
Cloudman - When will the symlinks be resolved ? by rssetia
6
by rssetia
job runner upload file by Jasper Jan Koehorst
1
by Nate Coraor (nate@bx...
ActionInputError undefined by Jim Johnson-3
1
by Nate Coraor (nate@bx...
(no subject) by Vipin TS
0
by Vipin TS
qa_url = slyfox? by David Hoover
1
by Nate Coraor (nate@bx...
Galaxy on cluster with LSF scheduler by Auerbach, Kenneth R.
1
by Nate Coraor (nate@bx...
From workflow to script by Victoria D Bohler
0
by Victoria D Bohler
Galaxy with LSF scheduler by Auerbach, Kenneth R.
0
by Auerbach, Kenneth R.
Oasesoptimiser Problem: Transcripts.fa not found by ricky_pz2
0
by ricky_pz2
Map with BWA results in correpted SAM file by Moritz Juchler
1
by Geert Vandeweyer
how to generate a workflow with customized tool names by Jun Fan
0
by Jun Fan
Appending _task_%d suffix to multi files by alexbk66
6
by John Chilton
Blank History by Alexander Kurze
0
by Alexander Kurze
Can I analyze *.csfasta & *.xsq data on Galaxy ? by nikhil_m
2
by nikhil_m
Galaxy -> IGV. Problem with bam and bai files by Moritz Juchler
0
by Moritz Juchler
How to Uninstall NCBI_Blast_Plus from ToolShed by raramayo
24
by Björn Grüning-3
UGENE tools integration into Galaxy web-platform by Пётр Леонтьев
1
by Joachim Jacob
[galaxy-user] History & Visualization list empty by Jennifer Jackson
1
by Benjamin Schuster-Bo...
Error running oasesoptimizer rev. 53e887dda799 (konradpaszkiewicz) on Galaxy fd4113962c32+ (stable) by raramayo
0
by raramayo
RFC: Implement 'cloudbiolinux_install' tool shed package install action. by John Chilton
0
by John Chilton
Local installation: Questions about using rsync to retrieve a genome by boazsh
1
by Gerald Bothe
Running local galaxy installation while another httpd is operating on the same computer by boazsh
1
by Nate Coraor (nate@bx...
Invalid Galaxy URL: None - Installing Tools Shed by Adam Brenner
9
by Greg Von Kuster
datatype logic by Ted Goldstein
1
by Jeremy Goecks
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