Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Choosing which nodes to run on for a whole history (Galaxy cluster) by gumboy
1
by Nate Coraor (nate@bx...
Toolshed repository update error by S.D. Hiltemann
1
by Björn Grüning-3
Sudden error in local galaxy installation by Raj Ayyampalayam
2
by Raj Ayyampalayam
Velvet optimizer: Running two long paired files. by Perez, Ricardo
1
by Björn Grüning
Error message by Mark Edward Fabreag
1
by Dannon Baker-2
extract metadata by Chris D
0
by Chris D
enable to edit pages by philippe
1
by Jeremy Goecks
Next Galaxy Release date (and Tool Shed update)? by Peter Cock
4
by Peter Cock
What are these called and where can I learn about them... by gordon b
0
by gordon b
fail to run gatk by karenchait
0
by karenchait
Downsampling of SAM/BAM files by Alexander Kurze
0
by Alexander Kurze
job_conf.xml questions by Ido Tamir
1
by shenwiyn
importing data from other public websites into galaxy by Prasun Dutta
0
by Prasun Dutta
Velvet optimizer problems : Urgent help. by Perez, Ricardo
1
by ricky_pz2
Problems with sharing datasets by ricky_pz2
0
by ricky_pz2
Build the Galaxy under Cluster by shenwiyn
3
by shenwiyn
Galaxy Proteomics mailing list by iracooke
0
by iracooke
Running RabbitMQ listener requires a path update by cganote@iu.edu
0
by cganote@iu.edu
Local: BWA 0.5.9. SA Coordinate/Segmentation fault by Moritz Juchler
0
by Moritz Juchler
CloudMan Error by greg-2
16
by denizere@gmail.com
Re: Number of outputs = number of inputs by Shafer, Christina
1
by Peter Cock
job_conf.xml about running Galaxy tools on a cluster. by shenwiyn
0
by shenwiyn
How to display tool instead of html WWFSMD page at start-up? by burdettn
6
by Jeremy Goecks
importing data from other public websites into galaxy by Prasun Dutta
0
by Prasun Dutta
Auto hide tool and history panels by burdettn
0
by burdettn
Does the xml tool wrapper language have ifs or functions? by gumboy
1
by Peter Cock
Tool Shed test framework breaking where run_functional_tests.sh works by Peter Cock
12
by Peter Cock
Tool Shed Request - sanity check uploads? by Peter Cock
8
by Peter Cock
GATK by sridhar srinivasan
3
by sridhar srinivasan
Installing Galaxy behind an Apache proxy using mod_auth_cas for user auth by Steve Harper
0
by Steve Harper
Fwd: Intersect Tool by Alexander Kurze
0
by Alexander Kurze
Regarding FTP configuration by Patra, Jibesh
0
by Patra, Jibesh
Re: BWA missing index on reference genome by Jennifer Jackson
1
by Moritz Juchler
Galaxy ego fetching error (Mac OS X 10.8) by Iry Witham
1
by Roman Valls
Problems with tophat in local instance by Rainy Luo
1
by hackdna
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