Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
How to display tool instead of html WWFSMD page at start-up? by burdettn
6
by Jeremy Goecks
importing data from other public websites into galaxy by Prasun Dutta
0
by Prasun Dutta
Auto hide tool and history panels by burdettn
0
by burdettn
Does the xml tool wrapper language have ifs or functions? by gumboy
1
by Peter Cock
Tool Shed test framework breaking where run_functional_tests.sh works by Peter Cock
12
by Peter Cock
Tool Shed Request - sanity check uploads? by Peter Cock
8
by Peter Cock
GATK by sridhar srinivasan
3
by sridhar srinivasan
Installing Galaxy behind an Apache proxy using mod_auth_cas for user auth by Steve Harper
0
by Steve Harper
Fwd: Intersect Tool by Alexander Kurze
0
by Alexander Kurze
Regarding FTP configuration by Patra, Jibesh
0
by Patra, Jibesh
Re: BWA missing index on reference genome by Jennifer Jackson
1
by Moritz Juchler
Galaxy ego fetching error (Mac OS X 10.8) by Iry Witham
1
by Roman Valls
Problems with tophat in local instance by Rainy Luo
1
by hackdna
Trouble using enumerate within <command> by Shafer, Christina
1
by Shafer, Christina
Re: HTML output with external Javascrip by Stewart, Andrew
0
by Stewart, Andrew
plain text output format by Mark
1
by Carl Eberhard
HTML output with external Javascript by phoenix123
4
by Jeremy Goecks
Lumi wrapper for Galaxy by Sachit Adhikari
0
by Sachit Adhikari
tool input is folder rather than file by Pankaj Narang
1
by Jeremy Goecks
Bowtie2 error: Creates a 62 kb file. by Perez, Ricardo
2
by Jeremy Goecks
uninstalling migrated tool by Shantanu Pavgi
2
by Dave Bouvier
All processes are freezed by Ali Sharifi Zarchi
1
by Dannon Baker-2
job_conf.xml workers by Ido Tamir
2
by Ido Tamir
BWA Illumina Mapping / BWA Reference Genome by Moritz Juchler
7
by Hans-Rudolf Hotz
Cloudman - is it possible to still use depreciated AMIs ? by rssetia
3
by rssetia
Bug report by Jianxin Wang
1
by James Taylor
Test ToolShed repository_dependencies.xml processing by Peter Cock
2
by Dave Bouvier
Disable cheetah filtering by Joachim Jacob
8
by Peter Cock
Local Instance: BWA, Sam-to-Bam, file upload, filter Sam by Moritz Juchler
0
by Moritz Juchler
GATK fasta file missing ERROR by sridhar srinivasan
0
by sridhar srinivasan
workflow: default parameters by Jens
2
by Jens
Cloudman master cannot connect to volume at start-up by rssetia
3
by rssetia
RFC: Cheetah template in tool_dependencies.xml by Björn Grüning
10
by Björn Grüning
[GSoC2013] Week 5 Update by saketkc
0
by saketkc
Two questions by Gromobir
8
by Gromobir
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