Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Functional Test Errors for Tool Shed Tools by Nilesh Kavthekar
2
by Nilesh Kavthekar
FastQC files are not being recognized by by ricky_pz2
2
by Jeremy Goecks
Dynamically Generated Tools by Michael E. Cotterell
9
by Ross-2
permissions by Lee Katz
0
by Lee Katz
tool inheritance by Lee Katz
2
by Lee Katz
Strange behaviour with galaxy history by Groot, Philip de
6
by Shane Sturrock
Support for Galaxy tools on Python by Hyungro Lee
0
by Hyungro Lee
possible bug by Thomas
0
by Thomas
Re: Cann't restart server after updating to the latest version by Joachim Jacob
0
by Joachim Jacob
Java JAXB for Tool Configuration Files by Michael E. Cotterell
0
by Michael E. Cotterell
Galaxy load problem by Auerbach, Kenneth R.
1
by Ross-2
Galaxy Local Admin user by Chadi Abdul Kader El...
4
by Hans-Rudolf Hotz
Postgres renaming to postgresql by Nikos Sidiropoulos
1
by Nikos Sidiropoulos
repeat tag enhancement? by Thomas
4
by Thomas
Galaxy-less Tool Installing by John Chilton
5
by John Chilton-2
Visualization in galaxy by sridhar srinivasan
3
by Carl Eberhard
toolshed repository down? by Linda Cham
0
by Linda Cham
Potential Bug when installing Tool dependencies by Michael E. Cotterell
0
by Michael E. Cotterell
DRMAA Runner URL Specify TORQUE host by Bart Gottschalk
4
by Bart Gottschalk
Re: To move galaxy local Production Instance to a new server setup by KM
0
by KM
provide group(s) association as a tool parameter by Christian Hundsrucke...
0
by Christian Hundsrucke...
Re: Testing with <repeat> parameters by Joachim Jacob
1
by Joachim Jacob
GALAXY LOCAL INSTALLATION: Remove history by Rafael Hernández
1
by Nate Coraor (nate@bx...
Galaxy Server Questions by Jennifer Jackson
0
by Jennifer Jackson
Error Uploading Directory of Files by Nicholas Kline
1
by Nate Coraor (nate@bx...
[GSoC2013] Week 4 Accomplishments and Week 5 Plans by saketkc
0
by saketkc
No samtools build after building index through Data Manager. by Graham Etherington
2
by Graham Etherington
Help with "Send output to Galaxy" function by huayan
2
by huayan
sam_fa_indexes by Ryan Davis
0
by Ryan Davis
Dynamically decide where a Galaxy tool runs by Saliya Ekanayake
4
by Saliya Ekanayake
BWA - failed to resolve dependency error by Shantanu Pavgi
1
by Shantanu Pavgi
Lessen load on server by Auerbach, Kenneth R.
1
by James Taylor
Re: Strange issue with Data Libraries by Patel, Viren
0
by Patel, Viren
Cloudman - Software does not work due to broken symlinks by rssetia
2
by rssetia
pbs_python Scramble Continues to Fail by Frost Mitchell
1
by Glen Beane
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