Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
GALAXY LOCAL INSTALLATION: Remove history by Rafael Hernández
1
by Nate Coraor (nate@bx...
Galaxy Server Questions by Jennifer Jackson
0
by Jennifer Jackson
Error Uploading Directory of Files by Nicholas Kline
1
by Nate Coraor (nate@bx...
[GSoC2013] Week 4 Accomplishments and Week 5 Plans by saketkc
0
by saketkc
No samtools build after building index through Data Manager. by Graham Etherington
2
by Graham Etherington
Help with "Send output to Galaxy" function by huayan
2
by huayan
sam_fa_indexes by Ryan Davis
0
by Ryan Davis
Dynamically decide where a Galaxy tool runs by Saliya Ekanayake
4
by Saliya Ekanayake
BWA - failed to resolve dependency error by Shantanu Pavgi
1
by Shantanu Pavgi
Lessen load on server by Auerbach, Kenneth R.
1
by James Taylor
Re: Strange issue with Data Libraries by Patel, Viren
0
by Patel, Viren
Cloudman - Software does not work due to broken symlinks by rssetia
2
by rssetia
pbs_python Scramble Continues to Fail by Frost Mitchell
1
by Glen Beane
Exit_code not working anymore by Mathieu Bahin
2
by Jeremy Goecks
Data_ref and multiple selection of columns from input file by CKannas
1
by CKannas
Trackster and bedtools error by Perez, Ricardo
3
by Jeremy Goecks
Using Jar files in Galaxy by sridhar srinivasan
3
by Graham Etherington
Tool availability by vs49
1
by Samuel Lampa-2
Short-term access to a galaxy server for teaching by Max Heiman
2
by Jeremy Goecks
Config specific tools that auto hide other panels to get more room by wbflame
1
by James Taylor
queue system by Jasper Jan Koehorst
2
by Jasper Jan Koehorst
virtualenv, jpype, and tool_dependencies.xml by Michael E. Cotterell
0
by Michael E. Cotterell
problem with python output by vs49
4
by saketkc
GATK DepthofCoverage tool by Jaworek, Thomas
0
by Jaworek, Thomas
tool availability by vijayalakshmi
0
by vijayalakshmi
Galaxy Server Processes Dying? by Dan Sullivan
2
by Dan Sullivan
datatype display_data function by Himanshu
1
by Peter Cock
Setting up reference genomes for GATK Genotyper by Marco Ocana
1
by Marco Ocana
trouble with share string by denizere@gmail.com
0
by denizere@gmail.com
NFS noac option by Timothy Carr
0
by Timothy Carr
remove already selected options from selection menu by Roloff, Tim
3
by Peter Cock
no metadata for tools in toolshed by Ido Tamir
1
by Peter Cock
Configuring the time of permanently deleting data sets. by Perez, Ricardo
2
by Bossers, Alex
Tool Error: Failure Preparing Job by veniceJuanillas
1
by Ross-2
allow users for specifying the number of CPUs by Jens
2
by Bossers, Alex
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