Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
instance restart fails with AttributeError: 'module' object has no attribute 'DataManagerHistoryAssociation' by Vipin TS
1
by Björn Grüning
phastCons scores all NaN by diana
0
by diana
Scripts interacting with the database by Lee Katz
1
by James Taylor
Startup problem after upgrade by Bertrand Pitollat
3
by Bertrand Pitollat
Empty & 'no peek' Returned Instead of HTML Output? by Amanda Zuzolo-2
1
by Ross-2
sqlite to postgresql conversion by Lee Katz
1
by Lee Katz
samtools BAM to SAM tmp directory by Matt Shirley
4
by Jeremy Goecks
nglims/removing multiplexing by Lee Katz
11
by Lee Katz
Galaxy + google analytics? by smcmahon67
2
by smcmahon67
Debugging the execution errors of the Python tools by Hyungro Lee
1
by Hyungro Lee
error while writing to pdf in python by vs49
1
by saketkc
Re: [Galaxy-gcc2013] Strange behaviour with galaxy history by Carl Eberhard
1
by ambrose andongabo
Multiple output files do not appear in history by Christoph Malisi
0
by Christoph Malisi
Error running tophat2 in Galaxy by Sachit Adhikari
1
by nextgen analysis
Upload files to data library by Lionel Guy
3
by Jeremy Goecks
Insert link in page editor by Ted Goldstein
1
by Jeremy Goecks
Strange Issue with Data Libraries by Patel, Viren
0
by Patel, Viren
Strange Issue with Data Library by Patel, Viren
0
by Patel, Viren
fastQ groomer waiting to run problem by Xu, Ye
0
by Xu, Ye
Patch in reference to trello card#968 by Eric Enns-2
0
by Eric Enns-2
June update breaks saved histories by Shane Sturrock
1
by Shane Sturrock
(no subject) by Dave Clements-2
0
by Dave Clements-2
Empty & 'no peek' Returned Instead of HTML Output? by Amanda Zuzolo-2
1
by Ross-2
Tophat2 output issue on LWR runner by Nikos Sidiropoulos
3
by John Chilton
Path to the bedtools for getting trackster working properly by Christophe Antoniews...
2
by Christophe Antoniews...
Managing a sequencer by Lee Katz
0
by Lee Katz
Tool Dependency Check for eXpress - requirements syntax incorrect? by Adam Brenner
2
by Adam Brenner
Getting "FATAL: sorry, too many clients already" in postgres database by thondeboer
0
by thondeboer
Dataset appears as running job in history when changing datatype by Julien SEILER
1
by Stephanie LE GRAS
Any Galaxers working on GenomeSpace, going to Oslo? by Samuel Lampa-2
0
by Samuel Lampa-2
Extra authentication by shashi shekhar-2
0
by shashi shekhar-2
Problem installing tools on cloud instance by Brad Zeitner
2
by Greg Von Kuster
DRMAA Runner URL Specify TORQUE host by Bart Gottschalk
0
by Bart Gottschalk
Styling the Galaxy tool config xml by Graham Etherington
1
by James Taylor
How to Clean up Old Data by greg-2
5
by jftaly
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