Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Empty & 'no peek' Returned Instead of HTML Output? by Amanda Zuzolo-2
1
by Ross-2
Tophat2 output issue on LWR runner by Nikos Sidiropoulos
3
by John Chilton
Path to the bedtools for getting trackster working properly by Christophe Antoniews...
2
by Christophe Antoniews...
Managing a sequencer by Lee Katz
0
by Lee Katz
Tool Dependency Check for eXpress - requirements syntax incorrect? by Adam Brenner
2
by Adam Brenner
Getting "FATAL: sorry, too many clients already" in postgres database by thondeboer
0
by thondeboer
Dataset appears as running job in history when changing datatype by Julien SEILER
1
by Stephanie LE GRAS
Any Galaxers working on GenomeSpace, going to Oslo? by Samuel Lampa-2
0
by Samuel Lampa-2
Extra authentication by shashi shekhar-2
0
by shashi shekhar-2
Problem installing tools on cloud instance by Brad Zeitner
2
by Greg Von Kuster
DRMAA Runner URL Specify TORQUE host by Bart Gottschalk
0
by Bart Gottschalk
Styling the Galaxy tool config xml by Graham Etherington
1
by James Taylor
How to Clean up Old Data by greg-2
5
by jftaly
Bowtie2 Specifying -k value (Alignment Search) by Adam Brenner
1
by Jeremy Goecks
How to enable auto option for newly added file formats by shashi shekhar-2
7
by shashi shekhar-2
unable to enter the Admin pages by Thomas
0
by Thomas
Toolshed bwa wrapper mistake by Yec'han Laizet
0
by Yec'han Laizet
GATK fasta file not found ERROR by sridhar srinivasan
1
by sridhar srinivasan
tool shed tools are not recognised in jobs_conf.xml by Björn Grüning
0
by Björn Grüning
Bowtie2 on a new local instance by Mathew Moore
0
by Mathew Moore
galaxy cuffdiff running too long by Robert Chase
5
by Robert Chase
BAM pileups bugging out by Andrew Guo
4
by Andrew Guo
Error in using Trackster: datatypes_conf.xml by Perez, Ricardo
1
by Jeremy Goecks
validation for tools by מירב .
1
by Jeremy Goecks
Proxy error while testing FASTX tools? by Sebastian Schaaf
0
by Sebastian Schaaf
account avatar by philippe
1
by Bossers, Alex
GATK tools not showing up in cloudman Galaxy installation by Marco Ocana
2
by Marco Ocana
[GSoC2013] Week 1 Accomplishments and Week 2 Plans by saketkc
0
by saketkc
Re: [galaxy-user] Problems when downloading a local galaxy tool (old version) by Dannon Baker-2
0
by Dannon Baker-2
Profile loss by Marley Yeong
1
by Dannon Baker-3
Re: Portable tool identifiers in workflows by Peter Cock
4
by Peter Cock
ProFTPD integration with Galaxy by Malcolm Tobias
3
by Malcolm Tobias
Installation of 20130603 Galaxy image with MySQL fails by Linda Cham
9
by jftaly
nglims roles by Lee Katz
4
by Brad Chapman
visulaization tool by shashi shekhar-2
15
by shashi shekhar-2
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