Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9224)
Replies Last Post Views
NFS noac option by Timothy Carr
0
by Timothy Carr
remove already selected options from selection menu by Roloff, Tim
3
by Peter Cock
no metadata for tools in toolshed by Ido Tamir
1
by Peter Cock
Configuring the time of permanently deleting data sets. by Perez, Ricardo
2
by Bossers, Alex
Tool Error: Failure Preparing Job by veniceJuanillas
1
by Ross-2
allow users for specifying the number of CPUs by Jens
2
by Bossers, Alex
nglims, remove Cycles or autofill by Lee Katz
1
by Brad Chapman
nglims error: "sequencing results" menu by Lee Katz
2
by Brad Chapman
Browse Galaxy main tool shed - Connection Reset error by Ben Warren
1
by Björn Grüning
Build the Galaxy under Cluster by shenwiyn
1
by Adam Brenner
Browse Galaxy main tool shed - Connection Reset error by Ben Warren
0
by Ben Warren
ToolShed dependencies KeyError: 'invalid_repository_dependencies' by Peter Cock
1
by Greg Von Kuster
Error Uploading Directory of Files by Nicholas Kline
2
by Björn Grüning
Galaxy on a server without internet connexion try to contact toolshed.g2.bx.psu.edu by Ghislain Fournous
1
by Greg Von Kuster
How were liftover and nib files generated? by Perez, Ricardo
1
by James Taylor
[GSoC2013] Week 2 Accomplishments and Week 3 Plans by saketkc
2
by saketkc
Regarding galaxy wrappers: "lumi", "DESeq" "edgeR" by Sachit Adhikari
5
by Sachit Adhikari
Postgresql database not working by Sajoscha Sauer
1
by Sajoscha Sauer
Question about bowtie2_indeces.loc by Perez, Ricardo
1
by Jeremy Goecks
instance restart fails with AttributeError: 'module' object has no attribute 'DataManagerHistoryAssociation' by Vipin TS
1
by Björn Grüning
phastCons scores all NaN by diana
0
by diana
Scripts interacting with the database by Lee Katz
1
by James Taylor
Startup problem after upgrade by Bertrand Pitollat
3
by Bertrand Pitollat
Empty & 'no peek' Returned Instead of HTML Output? by Amanda Zuzolo-2
1
by Ross-2
sqlite to postgresql conversion by Lee Katz
1
by Lee Katz
samtools BAM to SAM tmp directory by Matt Shirley
4
by Jeremy Goecks
nglims/removing multiplexing by Lee Katz
11
by Lee Katz
Galaxy + google analytics? by smcmahon67
2
by smcmahon67
Debugging the execution errors of the Python tools by Hyungro Lee
1
by Hyungro Lee
error while writing to pdf in python by vs49
1
by saketkc
Re: [Galaxy-gcc2013] Strange behaviour with galaxy history by Carl Eberhard
1
by ambrose andongabo
Multiple output files do not appear in history by Christoph Malisi
0
by Christoph Malisi
Error running tophat2 in Galaxy by Sachit Adhikari
1
by nextgen analysis
Upload files to data library by Lionel Guy
3
by Jeremy Goecks
Insert link in page editor by Ted Goldstein
1
by Jeremy Goecks
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