Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Cannot configure DRMAA by Patel, Viren
1
by cjav
Best practices for a local install of Galaxy by Paul St.
0
by Paul St.
Trying to configure external data source by dgorelik
0
by dgorelik
setting parameters for uploading a file for a java program by vs49
1
by James Taylor
Clone Galaxy from repository: mercurial from behind proxy? by Sebastian Schaaf
5
by Sebastian Schaaf
Galaxy setup from cloudman shows no tools in the tool panel by Marco Ocana
2
by Dannon Baker-2
trimest tool cuts the begining of my seq names in the output fasta file by Inbar Plaschke
1
by Hans-Rudolf Hotz
Best practices for a local install of Galaxy for only 1 user on a Mac by Paul St.
1
by Florent Angly
dynamically load and run R scripts by Jens
1
by Ross-2
The requested URL /cgi-bin-root/hgTracks was not found on this server by raramayo
0
by raramayo
invalid frame access with data source by Brian Craft
0
by Brian Craft
Cloudman - can you specify the volume size without needing to access the instance URL? by rssetia
1
by Dannon Baker-2
bowtie2 on galaxy cloudman? by Murphy, Theresa
1
by Enis Afgan
Cloudman - Can you label volumes after user specifies the volume size they want? by rssetia
1
by Enis Afgan
nglims/services/python by Lee Katz
3
by Lee Katz
problem integrating new jar file by vijayalakshmi
3
by Jeremy Goecks
transferring Trapnell et al programs into a one user instance of Galaxy by Elwood Linney
1
by Jeremy Goecks
wiki surge protection broken by Brian Craft
0
by Brian Craft
docs for data_source.py, file type handling, etc. by Brian Craft
0
by Brian Craft
printing output from java tool in the middle pane in galaxy by vs49
0
by vs49
How to speed up submissions of workflows by thondeboer
1
by Dannon Baker-2
formatting output from a java tool by vs49
0
by vs49
Download histories by Doan, Ryan
1
by Jeremy Goecks
Tool menu customization :: Card #727 by Björn Grüning
1
by Björn Grüning
moving galaxy published pages by Vipin TS
1
by Dannon Baker-2
Re: [galaxy-user] How do I add Ray to Galaxy Central in the tool shed ? by Sébastien Boisvert
1
by Jennifer Jackson
Galaxy wrappers for NCBI BLAST+ BoF by Peter Cock
0
by Peter Cock
blastn: Error: NCBI C++ Exception by Thomas
5
by Peter Cock
Question about the UCSC external viewer by Malcolm Tobias
0
by Malcolm Tobias
database upgrade crashes after upgrade to the June 3, 2013 Galaxy release by Christophe Antoniews...
3
by Dannon Baker-2
Galaxy Security Notification by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Toolshed bug related to readme files by Lance Parsons
4
by Greg Von Kuster
Galaxy on Cluster - how to set -a flag with username by greg-2
5
by greg-2
Recently Used Histories by Jonathan Strickland-...
1
by Jeremy Goecks
Trackster error: not able to find the chrom len file by Joachim Jacob
2
by Jeremy Goecks
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