Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Problems running functional tests by iracooke
8
by Björn Grüning
Bypassing the proxy server when using the API, without breaking the automatic update of the history in the web interface by thondeboer
3
by thondeboer
local install problem by alk224
3
by Dannon Baker-2
Issue with set_user_disk_usage.py and Postgres 8.x by Lance Parsons
4
by Lance Parsons
Installation Instructions slightly wrong by Michael E. Cotterell
1
by Nate Coraor (nate@bx...
nested repositories and tools by Simon Gladman
1
by Björn Grüning
none mapping is not currently available! by Sameer Dixit
1
by Sameer Dixit
Galaxy Config Questions by Nicholas Kline
1
by Adam Brenner
error after pulling latest updates by Branden Timm-2
2
by Nate Coraor (nate@bx...
Tool Visibility by Michael E. Cotterell
10
by Michael E. Cotterell
Re: Creating multiple datasets in a libset by burdettn
7
by Hakeem Almabrazi
Error / import rpy module by Sarah Maman-2
7
by Hans-Rudolf Hotz
Creating workflow which includes Multifile upload by alexbk66
4
by John Chilton
Local instance - Problem when log in/out by Stephanie LE GRAS
3
by Stephanie LE GRAS
Internal Server Error during installation of ncbi_blast_plus by Jens
10
by Jens
Adding a Tool for PANAMA by saketkc
5
by saketkc
mapping Summary from Bowtie by sridhar srinivasan
1
by Jeremy Goecks
GCC2013 Regular Registration closes June 14 by Dave Clements-2
0
by Dave Clements-2
June 3, 2013 Galaxy Distribution by Jennifer Jackson
0
by Jennifer Jackson
Problem with tool in R by Ramon Tiburski
1
by Nate Coraor (nate@bx...
Information for Galaxy Event Horizon by Sarah Maman-2
1
by Dave Clements-2
storage utilisation on the main galaxy instance by Nikolay N.
0
by Nikolay N.
Stable usegalaxy.org links for main Tool Shed repositories? by Peter Cock
0
by Peter Cock
Run galaxy on a specific SGE queue by sarah Maman
2
by Sarah Maman-2
FW: order of menu items by Stephanie LE GRAS
2
by Stephanie LE GRAS
BWA installation by מירב .
3
by Ross-2
problem with current galaxy to submit job to drmaa/sge by tin h
2
by tin h
Re: [galaxy-user] List of genomes by Jennifer Jackson
1
by YBao
uploading large datasets into a new instance of Galaxy on a Mac Pro by Elwood Linney
2
by Dannon Baker-2
Storage question for Galaxy-Admins by Raj Ayyampalayam
2
by Adam Brenner
"login to ftp server failed" or "Problem with ftp connexion to Galaxy" by Danni Yu
2
by Danni Yu
Getting example_watch_folder.py to work... by burdettn
7
by Hakeem Almabrazi
Re: Multi File upload api by alexbk66
4
by John Chilton
June 2013 Galaxy Update by Dave Clements-2
0
by Dave Clements-2
Status of Galaxy Cloud Instance dev by Joachim Jacob
3
by Dannon Baker-2
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