Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Local instance - Problem when log in/out by Stephanie LE GRAS
3
by Stephanie LE GRAS
Internal Server Error during installation of ncbi_blast_plus by Jens
10
by Jens
Adding a Tool for PANAMA by saketkc
5
by saketkc
mapping Summary from Bowtie by sridhar srinivasan
1
by Jeremy Goecks
GCC2013 Regular Registration closes June 14 by Dave Clements-2
0
by Dave Clements-2
June 3, 2013 Galaxy Distribution by Jennifer Jackson
0
by Jennifer Jackson
Problem with tool in R by Ramon Tiburski
1
by Nate Coraor (nate@bx...
Information for Galaxy Event Horizon by Sarah Maman-2
1
by Dave Clements-2
storage utilisation on the main galaxy instance by Nikolay N.
0
by Nikolay N.
Stable usegalaxy.org links for main Tool Shed repositories? by Peter Cock
0
by Peter Cock
Run galaxy on a specific SGE queue by sarah Maman
2
by Sarah Maman-2
FW: order of menu items by Stephanie LE GRAS
2
by Stephanie LE GRAS
BWA installation by מירב .
3
by Ross-2
problem with current galaxy to submit job to drmaa/sge by tin h
2
by tin h
Re: [galaxy-user] List of genomes by Jennifer Jackson
1
by YBao
uploading large datasets into a new instance of Galaxy on a Mac Pro by Elwood Linney
2
by Dannon Baker-2
Storage question for Galaxy-Admins by Raj Ayyampalayam
2
by Adam Brenner
"login to ftp server failed" or "Problem with ftp connexion to Galaxy" by Danni Yu
2
by Danni Yu
Getting example_watch_folder.py to work... by burdettn
7
by Hakeem Almabrazi
Re: Multi File upload api by alexbk66
4
by John Chilton
June 2013 Galaxy Update by Dave Clements-2
0
by Dave Clements-2
Status of Galaxy Cloud Instance dev by Joachim Jacob
3
by Dannon Baker-2
[GSoC 2013] Introduction by saketkc
4
by Samuel Lampa-2
Making Public a Data Library Gives Internal Server Error by raramayo
0
by raramayo
import Workflow from public Galaxy to local instance by Andreas Kuntzagk
6
by Jeremy Goecks
Creating tool shed repository: installation of dependencies fails. by Joachim Jacob
15
by Peter Cock
Setting up Galaxy interface to motif finding software by tom
0
by tom
installing galaxy by מירב .
3
by מירב .
organizing datasets in the history by 吳正華-2
1
by Jeremy Goecks
cufflinks in the main galaxy instance is not able to produce compatible FPKM score by Nikolay N.
1
by Jeremy Goecks
Problem to download mercurial egg by Marc DELOGER
1
by Nate Coraor (nate@bx...
Genome not listed by sridhar srinivasan
1
by cjav
Feature Request - Reload Button by Michael E. Cotterell
0
by Michael E. Cotterell
advice on a mixed cloud/SGE architecture by Nikolay N.
3
by Dannon Baker-2
php script integration query by Prasun Dutta
1
by Dannon Baker-2
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