Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Workflow refresh by burdettn
2
by burdettn
finding parts of tool_conf.xml by vijayalakshmi
3
by Dannon Baker-2
very long load times for some shared libraries... by Langhorst, Brad
1
by Dannon Baker-2
maximum recursion depth error by Ann Holtz-Morris, M....
1
by Dannon Baker-2
missing new job lock function by Leon Mei
1
by Dannon Baker-2
Problem changing username by Thomas Haverkamp
1
by Dannon Baker-2
User expiration date by nikos
1
by Dannon Baker-2
pre-commit hook for easier deployment of complex repository definitions by Björn Grüning
0
by Björn Grüning
Re: Displaying BED files in IGV by menorca
0
by menorca
login to ftp server failed by Barbara Susanne Sixt
0
by Barbara Susanne Sixt
Cross Tool Shed dependencies / blast_datatypes by Peter Cock
11
by Peter Cock
Problem with ftp connexion to Galaxy by Fabrice BESNARD
1
by Jennifer Jackson
Problem about main.g2.bx.psu.edu is taking too long to respond. by จุรีรัตน์ โพธิ์แก้ว
1
by Jennifer Jackson
populating the pull-down menu: reference genomes (built-in index) by Staheli, Jeannette
1
by Jennifer Jackson
Problem to download mercurial egg by Jennifer Jackson
0
by Jennifer Jackson
liftover by Anna Kropornicka
0
by Anna Kropornicka
Is there a way through the API to know when a file has completed the upload process? by thondeboer
1
by thondeboer
Displaying genomic sequences in Trackster by Naharajan Lakshmanap...
4
by Jeremy Goecks
XML files for MACS v1.4 by vs49
0
by vs49
Suggestion for "Latest revision: installation errors" by Peter Cock
1
by Greg Von Kuster
tool_dependencies inside tool_dependencies by Björn Grüning
15
by Björn Grüning
writing <command> tag in xml file for a C++ tool by vijayalakshmi
1
by Björn Grüning
Hard time getting UCSC to work with our server by Shane Sturrock
0
by Shane Sturrock
Test Tool Shed still running tests marked as skip? by Peter Cock
1
by Dave Bouvier
<command> tag in xml file for a C++ tool by vs49
2
by James Taylor
nginx Proxy to VM problem by Michael E. Cotterell
2
by Michael E. Cotterell
location of .loc-files/data tables -- bug or feature? by Christian Hundsrucke...
2
by Christian Hundsrucke...
workflow startup issues by Geert Vandeweyer
5
by Geert Vandeweyer
Irregular failures on cluster (pbs_python?) by cjfields
5
by cjfields
changing the order of display in the left pane by vijayalakshmi
2
by Björn Grüning
How to create BAM indices on cluster upon upload by thondeboer
0
by thondeboer
Cloudman / galaxyIndicies by rdlecler
1
by Dannon Baker-2
Cloudman - missing security rules in wiki page by Joachim Jacob
1
by Dannon Baker-2
Error in installing Galaxy. by sridhar srinivasan
10
by James Taylor
how to set GridEngine parameters for tools by Andreas Kuntzagk
2
by Andreas Kuntzagk
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