Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8886)
Replies Last Post Views
Unable to run workflow from command-line by Aarthi Mohan
0
by Aarthi Mohan
python environment on SGE cluster nodes by David Simpson
3
by David Simpson
creating roles through the API by Lemley, Rob
0
by Lemley, Rob
strange submit script by Nikolaos Tur
0
by Nikolaos Tur
unable to install tools by Briand, Sheldon (NRC...
3
by Briand, Sheldon (NRC...
keeping the original file name from the FTP pop-up by vazovn
0
by vazovn
uWSGI dataset request error by Dawes, Gwen
0
by Dawes, Gwen
Combine different resolvers for one tool by Ignacio EGUINOA
0
by Ignacio EGUINOA
Running jobs as real user and extra_file_path by Louise-Amélie Schmit...
3
by Peter Cock
Environmental Variable in <version_command> by D K
0
by D K
Additional Information about users in the API by Milen Kouylekov
4
by Martin Čech
Galaxy User IDs and Group IDs by Lemley, Rob
1
by Martin Čech
conda path problem by Matthias Bernt
0
by Matthias Bernt
conda installation fails by Matthias Bernt
3
by Matthias Bernt
atlas version 3.10.2 installation error by Matthias Bernt
8
by Peter Cock
Testing updated NCBI BLAST+ wrappers for version 2.5.0 by Peter Cock
1
by Peter Cock
SSL certificate errors by Matthias Bernt
2
by Matthias Bernt
GCC2107 Update: Oral presentation abstracts due 15 April by Dave Clements-2
1
by Peter Cock
drmaa on univa grid engine by Matthias Bernt
1
by Marius van den Beek
Galaxy Reports Webapp Login by Timo Janßen
2
by Timo Janßen
drmaa chown sudo by Matthias Bernt
0
by Matthias Bernt
Fwd: [Bosc] BOSC 2017: Call for Abstracts by Peter Cock
1
by Peter Cock
git clone 16.10 bwa 0.7.15 data manager by Bryan Hepworth
1
by Peter Cock
galaxy startup errors and warnings by Matthias Bernt
0
by Matthias Bernt
cytoscape & charts by Matthias Bernt
1
by Aysam Guerler
Login message by Timo Janßen
3
by Martin Čech
Galaxy Pbs Pro drmaav2 by Laure QUINTRIC
0
by Laure QUINTRIC
April 2017 Galaxy News: GCC2017 + new events, papers, jobs, servers, releases, and a milestone by Dave Clements-2
0
by Dave Clements-2
"Execute" button does nothing in the CrossMap tool? by Devon Ryan
0
by Devon Ryan
SLURM configuration problem by Leonor Palmeira
8
by Marius van den Beek
LDAP group data synchronization by Matthias Bernt
3
by Matthias Bernt
deprecated 'page' tag in tool xml - more than deprecated? by Hans-Rudolf Hotz
1
by Hans-Rudolf Hotz
Problem with downloading datasets using wget or curl by Ashok Varadharajan
1
by Ashok Varadharajan
Dataset Generation Errors by Lapointe, David
4
by Lapointe, David
Convert BED to Feature Location Index breaks when "preserve_python_environment = legacy_only" by Hans-Rudolf Hotz
1
by Hans-Rudolf Hotz
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