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Galaxy Development List Archive

This forum is an archive for the mailing list galaxy-dev@lists.galaxyproject.org
Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8867)
Replies Last Post Views
Galaxy Reports Webapp Login by Timo Janßen
2
by Timo Janßen
drmaa chown sudo by Matthias Bernt
0
by Matthias Bernt
Fwd: [Bosc] BOSC 2017: Call for Abstracts by Peter Cock
1
by Peter Cock
git clone 16.10 bwa 0.7.15 data manager by Bryan Hepworth
1
by Peter Cock
galaxy startup errors and warnings by Matthias Bernt
0
by Matthias Bernt
cytoscape & charts by Matthias Bernt
1
by Aysam Guerler
Login message by Timo Janßen
3
by Martin Čech
Galaxy Pbs Pro drmaav2 by Laure QUINTRIC
0
by Laure QUINTRIC
April 2017 Galaxy News: GCC2017 + new events, papers, jobs, servers, releases, and a milestone by Dave Clements-2
0
by Dave Clements-2
"Execute" button does nothing in the CrossMap tool? by Devon Ryan
0
by Devon Ryan
SLURM configuration problem by Leonor Palmeira
8
by Marius van den Beek
LDAP group data synchronization by Matthias Bernt
3
by Matthias Bernt
deprecated 'page' tag in tool xml - more than deprecated? by Hans-Rudolf Hotz
1
by Hans-Rudolf Hotz
Problem with downloading datasets using wget or curl by Ashok Varadharajan
1
by Ashok Varadharajan
Dataset Generation Errors by Lapointe, David
4
by Lapointe, David
Convert BED to Feature Location Index breaks when "preserve_python_environment = legacy_only" by Hans-Rudolf Hotz
1
by Hans-Rudolf Hotz
Contributing to Galaxy project by maximilian_greil
2
by Anton Nekrutenko-2
Adding Custom Button Based on Eventual Output Datatype and/or Tool Used by Joe Greer
1
by Björn Grüning-3
proftpd sftp setup doesn't work by Beginner TI
3
by Tiago Macedo
tabular to bed by Matthias Bernt
1
by Tiago Macedo
bowtie2 indexes & errors by Nikolaos Tur
0
by Nikolaos Tur
Conda dependency seemingly installed but failed to build job environment. by Alexandre
0
by Alexandre
GSoC 2017: Project Publication Reference Tracking: Building a community by Dave Clements-2
0
by Dave Clements-2
startup bug in lib/galaxy/tools/toolbox/base.py by Matthias Bernt
2
by Matthias Bernt
Shared Data Library, large number of files by D K
15
by Nicola Soranzo-3
BioBlend: getting a list of datasets in a folder by D K
2
by D K
galaxy user data on file system with limited file lifetime by Matthias Bernt
0
by Matthias Bernt
All Jobs Error Out by Yip, Miu ki
2
by Yip, Miu ki
View uploaded files by pieter coussement-2
2
by pieter coussement-2
Disk organization for Jetstream Galaxy instance by David Kovalic
2
by David Kovalic
Tool dependency installation on older Galaxy installations by Brian Claywell-2
1
by Björn Grüning-3
Newline characters for txt files by Lawrence, Cris W
1
by John Chilton-4
installation error on venv dependencies.xml by Linda Bakker
1
by John Chilton-4
DeepTools installation error by Timo Janßen
4
by Timo Janßen
Search Tool Shed by Matthias Bernt
3
by Martin Čech
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