Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9068)
Replies Last Post Views
Ensuring Python 2.7 when resolving conda dependencies for tool by Peter Briggs
6
by Peter Briggs
Disabling downloading datasets from the UI! by Hakeem Almabrazi-2
0
by Hakeem Almabrazi-2
bigwig problem by Jochen
7
by Jochen
tool output pattern syntax by Jochen
0
by Jochen
Problem Loading Conda tool dependencies by Hendriks, Marian
0
by Hendriks, Marian
Updating Bioblend on existing Galaxy installation by Lachlan Musicman
2
by Martin Čech
environment for jobs by Matthias Bernt
0
by Matthias Bernt
Help with from_dataset param in Galaxy XML by SAPET, Frederic
0
by SAPET, Frederic
Looking for a running example of planemo test with options from_data_table by Laure QUINTRIC
1
by Nicola Soranzo-2
Running toolshed on localhost is broken in release_17.09? by Peter Briggs
2
by Peter Briggs
Planemo unable to create a shed by Begusch Florian
0
by Begusch Florian
Re: Predict similar tools for Galaxy tools using text mining and machine learning by Yvan Le Bras-2
1
by anup_kumar
use or convert tool.xml file for database webpage by Jochen
3
by Gildas Le Corguillé
Predict similar tools for Galaxy tools using text mining and machine learning by anup_kumar
0
by anup_kumar
Predict similar tools for Galaxy tools using text mining and machine learning by anup_kumar
0
by anup_kumar
tool IO graph by Matthias Bernt
0
by Matthias Bernt
Help with downloading an ouput from RepeatExplorer by Kareen Seignon
0
by Kareen Seignon
abnormal termination at worker using supervisord by Vipin TS
0
by Vipin TS
Cluster Install Path Errors by jletaw667
8
by jletaw667
Archive of Histories by M_Enders
0
by M_Enders
"Edit attributes" for interval dataset not consistent with documentation by Peter Briggs
2
by Peter Briggs
No legal value defined in a planemo test for param type="select" and options="from_file" by Olivier Inizan-2
4
by Olivier Inizan-2
upload from dropbox by Matthias Bernt
2
by Matthias Bernt
Error at the end of a BWA job by SAPET, Frederic
2
by SAPET, Frederic
User Registration Error by ThomasD
2
by Martin Čech
Problem with dependencies: Conda/freebayes by M_Enders
4
by M_Enders
Problems installing conda dependencies for seq2hla tool by Peter Briggs
1
by Peter Briggs
Galaxy v17.09 impersonation doesn't work by Ping
4
by Ping
tool publishing by Matthias Bernt
5
by Marius van den Beek
intended behaviour for multiple data sets by Matthias Bernt
2
by Matthias Bernt
History Share : options by Christophe Caron-2
1
by Jennifer Hillman-Jac...
Network errors when downloading files by Van Der Pol William
2
by Van Der Pol William
Dynamic Tool UI based on script by evan clark
7
by Steve Cassidy
Galaxy moves files form job directory but attempts to look for them at original path by Evan Clark-2
1
by John Chilton-4
TR: Close cluster by Arnaud Cheuk
1
by Enis Afgan-3
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