Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9209)
Replies Last Post Views
set metadata resubmission by Matthias Bernt
0
by Matthias Bernt
Workflow assigning columns on output causes "Uncaught exception in exposed API method" by Peter Briggs
2
by Peter Briggs
samtools_slice_bam/2.0.1 no options available by Eric Kuyt-2
3
by Martin Čech
new datasets appear in database/files/000/ by Jochen
2
by Dannon Baker-2
Re: galaxy-dev Digest, Vol 155, Issue 3 by Matthias Bernt
1
by Jochen
URL prefix doesn't work properly in Galaxy v18.09 by Ping
3
by Ping
Tagging collection datasets from file with hashtags by Charles Girardot
0
by Charles Girardot
Share Docker Volumes when integrating Containers in Galaxy by Schäfer, Richard
1
by Galaxy Development L...
Galaxy jobs on Apache Mesos with chronos.py runner by Pietro Mandreoli
1
by John Chilton-4
Random failed job after update 18.05 -> 19.01 by Edouard Hirchaud
0
by Edouard Hirchaud
galaxy not running after galaxy.yml changes by Jochen
3
by Nicola Soranzo-3
Gateways 2019 CFP EXTENSION: Abstracts Due May 6 + Full Submissions Due May 15 by Katherine Lawrence
0
by Katherine Lawrence
Nginx+Shibboleth+UCSC by Martin Demko
1
by Martin Čech
user login / registration problem by Matthias Bernt
0
by Matthias Bernt
tool installation problem by Matthias Bernt
3
by Matthias Bernt
GalaxyAdmins online meetup this Thursday by Dave Clements-2
1
by Dave Clements-2
Serious issues with picard-tools after upgrade to Galaxy version 19.01 by Previti
1
by Previti
Upload bigger 2GB by Jochen
2
by Jochen
Gateways 2019 Call for Participation (Abstracts due April 29; Full submissions due May 6) by Katherine Lawrence
0
by Katherine Lawrence
A question about Galaxy by Abdullah El Kurdi
1
by Björn Grüning-3
[GSoC 2019] [Open Genome Informatics] Google Summer of Code 2019 Participation by Robin Haw
1
by Robin Haw
Uncaught exception in exposed API method: by Jochen
2
by Jochen
Question using sftp to upload file to galaxy by Rui Wang
4
by Marius van den Beek
featureCounts with GFF by Jochen
0
by Jochen
add labels to tools by Jochen
3
by Gildas Le Corguillé
Copying files to FTP upload directory by Keith Suderman
4
by Keith Suderman
Bugfix for CollectRNAmetrics (Picardtools) by Previti
2
by Previti
Input paired dataset collection in workflow by Previti
1
by Previti
usegalaxy.eu is hiring! by Björn Grüning-3
0
by Björn Grüning-3
Re: Central German Galaxy User Group Meeting 2 by Matthias Bernt
2
by Peters, Kristian
sorry by Matthias Bernt
0
by Matthias Bernt
run.sh problem by Matthias Bernt
3
by Dannon Baker-2
Forgotten password by Dalibor Miklík
0
by Dalibor Miklík
End of 2018 Reminders: Admin Training, GCC2019 Training Topic Nominations, and GalaxyAdmins meetups topics by Dave Clements-2
0
by Dave Clements-2
Galaxy Administrator Training, Jan 28 - Feb 1, Penn State University by Dave Clements-2
2
by Dave Clements-2
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