Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9000)
Replies Last Post Views
Pause queued jobs by Lachlan Musicman
0
by Lachlan Musicman
show tool errors admin interface by Previti
0
by Previti
Docker Galaxy & HISAT2: ValueError: Parameter index requires a value, but has no legal values defined. by Peter van Heusden
0
by Peter van Heusden
Re: upload file format is data - type not recognized in, galaxy by Evan
1
by Pavel Fibich
resubmission on out of memory by Matthias Bernt
3
by Marius van den Beek
Changing $galaxy_lib Variable by evan clark
0
by evan clark
Cron Job Tool by Mohamed Kassam
1
by John Chilton-4
Galaxy server requires a restart to activate tools by RMSe17
4
by RMSe17
Galaxy cloud azur by Mohamed Kassam
1
by Enis Afgan-3
upload file format is data - type not recognized in galaxy by Pavel Fibich
5
by Pavel Fibich
Question about "reference_fasta_filename" for "Map with BWA" (existing tool) by Qian, Yingzhi
0
by Qian, Yingzhi
Displaying tool select list according to user by Laure QUINTRIC
13
by Mohamed Kassam
galaxy behind firewall by Matthias Bernt
3
by Daniel Blankenberg-2
Deprecation of Sample Tracking and External Services by Aysam Guerler
0
by Aysam Guerler
Dependencies issue with tool installation via ephemeris by RMSe17
6
by Björn Grüning-3
tool runtimes by Matthias Bernt
0
by Matthias Bernt
installation/conda problems by Matthias Bernt
3
by Matthias Bernt
Issues with new galaxy and galaxy_lib by Evan
0
by Evan
unipept visualization by Matthias Bernt
7
by Nicola Soranzo-2
conda problem by Matthias Bernt
2
by Matthias Bernt
[hxr@hx42.org: [SECURITY] 2017-08 security patch. Update now!] by E. Rasche
0
by E. Rasche
Error while building reference genome index by Laurent Fournier
0
by Laurent Fournier
Re: galaxy-dev Digest, Vol 134, Issue 19 by Matthias Bernt
0
by Matthias Bernt
Error with run as real user, unable to read file by Evan
0
by Evan
Firefox drag and drop not working by Jochen
3
by Aysam Guerler
job_working_directory: no subdirectories created by D K
0
by D K
toolshed and testtoolshed by Matthias Bernt
2
by Björn Grüning-3
Conda dependency install problems for DESeq2 tool by Peter Briggs
2
by Peter Briggs
Groovy tool for galaxy by Anshul Tak
4
by Keith Suderman
Image in tool XML "help" section only renders when installed from toolshed? by Peter Briggs
6
by Peter Briggs
User Preferences not rendering view, insetting galaxy UI by evan clark
2
by Aysam Guerler
Python Communication by evan clark
2
by evan clark
Gateways 2017: Early-bird registration open until Sept. 1; register by Th., Oct. 12 by Katherine Lawrence
0
by Katherine Lawrence
Galaxy Copying New Files by evan clark
0
by evan clark
Galaxy Conda resolver install Issue by evan clark
2
by Matthias Bernt
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