Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Hard time getting UCSC to work with our server by Shane Sturrock
0
by Shane Sturrock
Test Tool Shed still running tests marked as skip? by Peter Cock
1
by Dave Bouvier
<command> tag in xml file for a C++ tool by vs49
2
by James Taylor
nginx Proxy to VM problem by Michael E. Cotterell
2
by Michael E. Cotterell
location of .loc-files/data tables -- bug or feature? by Christian Hundsrucke...
2
by Christian Hundsrucke...
workflow startup issues by Geert Vandeweyer
5
by Geert Vandeweyer
Irregular failures on cluster (pbs_python?) by cjfields
5
by cjfields
changing the order of display in the left pane by vijayalakshmi
2
by Björn Grüning
How to create BAM indices on cluster upon upload by thondeboer
0
by thondeboer
Cloudman / galaxyIndicies by rdlecler
1
by Dannon Baker-2
Cloudman - missing security rules in wiki page by Joachim Jacob
1
by Dannon Baker-2
Error in installing Galaxy. by sridhar srinivasan
10
by James Taylor
how to set GridEngine parameters for tools by Andreas Kuntzagk
2
by Andreas Kuntzagk
Test Tool Shed - Installation Error "None" for repository dependencies by Peter Cock
0
by Peter Cock
Tophat problem by Zain A Alvi
3
by Jennifer Jackson
GCC2013 Early Registration ends this Friday, 24 May by Dave Clements-2
0
by Dave Clements-2
bad gateway? by Megan Wilson
1
by Jennifer Jackson
Galaxy lists empty file for composite datatypes by Peter Cock
0
by Peter Cock
Galaxy group at Google+ by Samuel Lampa-2
0
by Samuel Lampa-2
Test Tool Shed uploads broken by Peter Cock
2
by Peter Cock
Add a download process to a job handler in history queue by zinonas
0
by zinonas
Workflow: multiple input errors by Joachim Jacob
1
by Joachim Jacob
Handling of tool_dependencies.xml errors in Tool Shed testing by Peter Cock
19
by Peter Cock
selecting multiple inputs for workflows not possible anymore by Joachim Jacob
6
by Joachim Jacob
Bug in history when using Admin account ?? by burdettn
2
by burdettn
Resizing galaxy cloudman /mnt/galaxyData partition by Iry Witham
16
by Kathryn Sun
Recall: [External] Re: [galaxy-user] Question on galaxy data visualization by Kathryn
1
by Jennifer Jackson
Recall: [External] Re: [galaxy-user] Question on galaxy data visualization by Kathryn
0
by Kathryn
Re: [External] Re: [galaxy-user] Question on galaxy data visualization by Kathryn
0
by Kathryn
Can't delete empty folder via Tool Shed web interface by Peter Cock
2
by Peter Cock
memdump by Nikos Sidiropoulos
1
by James Taylor
Testing with <repeat> parameters by Peter Cock
0
by Peter Cock
rpy2 Core Tools by John Chilton
1
by Hans-Rudolf Hotz
History page not opening by sridhar srinivasan
4
by Carl Eberhard
selecting multiple inputs for workflows not possible by Joachim Jacob
1
by Dannon Baker-2
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