Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Suggestion for improved feedback on failing tests by iracooke
4
by Greg Von Kuster
Track Job Runtime by Geert Vandeweyer
5
by Geert Vandeweyer
history page not opening by sridhar srinivasan
2
by sridhar srinivasan
Script to help maintain toolshed repos across toolsheds by iracooke
16
by Greg Von Kuster
Function for deleting specific datasets from the history by aris
1
by Dannon Baker-2
How is the paster.py running to start Galaxy Framework ? by wangdan
1
by James Taylor
Problem with Tools Relying on R by panza1370
1
by James Taylor
Re: Display with IGV local by menorca chaturvedi
0
by menorca chaturvedi
Column argument validation breaks on empty tabular files by Peter Cock
0
by Peter Cock
Protocol for changing the section of an installed tool shed repo by Joachim Jacob
3
by Joachim Jacob
Something wrong with connecting Galaxy with mysql/postgresql server when uploading datasets by wangdan
0
by wangdan
Missing revisions on (Test) Tool Shed by Peter Cock
2
by Greg Von Kuster
UnicodeDecodeError: 'utf8' codec can't decode byte 0xb9 in position 15: invalid start byte by Ramon Tiburski
4
by Ramon Tiburski
Multiple values in <when> tags for <conditiona> parameters by Peter Cock
2
by Peter Cock
migration error by Robert Baertsch-2
5
by Peter Cock
How to transfer or upload datasets to Galaxy server automatically? by wangdan
1
by Jeremy Goecks
Error cleaning up Condor jobs by Branden Timm-2
4
by Branden Timm-2
question on fastqc by Kathryn Sun
0
by Kathryn Sun
routing to a cluster or not on a per-tool basis by Dan Tenenbaum
3
by Dan Tenenbaum
Difficulties using <repeat> tagset with min attribute by Cory Spencer
2
by Peter Cock
Step 3 of "get Microbial Data" install by Sarah Maman-2
1
by Jennifer Jackson
Error installing migrated tool deps by Branden Timm-2
2
by Branden Timm-2
Error cleaning up Condor jobs by Branden Timm-2
0
by Branden Timm-2
Galaxy Keeps Freezing by Kim Spradling
1
by Jennifer Jackson
Galaxy Jobs Waiting to Run for Several Days by Elnagheeb, Marwa
1
by Jennifer Jackson
Strange issue where the dataset reported in the bug report doesn't correspond to the current dataset by Jean-Francois Payott...
9
by Jean-Francois Payott...
conditions within workflows by Olivia Doppelt
1
by Dannon Baker-2
tool shed installations and grouping in categories by Björn Grüning
1
by Greg Von Kuster
List of genomes by Lee Katz
1
by Jeremy Goecks
Improving the change revision view on the Tool Shed by Peter Cock
1
by Greg Von Kuster
user password different type encoding by Vipin TS
9
by Bob Harris
Usability bug/inconsistency with workflows versus tools by Peter Cock
1
by Dannon Baker-2
Running Galaxy through Apache by Jeffrey Long
6
by Jeffrey Long
"Published Workflows" missing from "All Workflows" by Peter Cock
2
by Peter Cock
Taxonomy fetching not working by Deepthi Thomas Kanna...
1
by Adam Brenner
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