Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Conditional tool options based on input file format? by Peter Cock
6
by Peter Cock
LWR runner configuration for shared folder in cluster by Krampis, Konstantino...
4
by John Chilton
galaxysession cookie secure flag by Vipin TS
1
by Vipin TS
Any hint on how to use Galaxy within virtualenv? by Jean-Francois Payott...
4
by Jean-Francois Payott...
May 2013 Galaxy Update by Dave Clements-2
0
by Dave Clements-2
user creation using API by Hagai
3
by Rémy Dernat
(no subject) by sridhar srinivasan
2
by sridhar srinivasan
Running galaxy using Apache as proxy by Michael Place
1
by Adam Brenner
Re: [galaxy-user] Amazon EC2: An error occurred running this job: Job output not returned from cluster by Dave Lin
2
by Brian Lin
Load balancing and job configuration by Olivier Inizan
2
by Olivier Inizan
Quick question about new job configuration by cganote@iu.edu
0
by cganote@iu.edu
workflow multiple inputs by Olivia Doppelt
1
by Dannon Baker-2
Re: [Biopython] GFF parsing with biopython by Brad Chapman
1
by Mic
Problem accessing test tool shed repositories by hackdna
2
by hackdna
MPileup for cloudman instance by Iry Witham
0
by Iry Witham
Tests for Workflows on the tool shed? by Peter Cock
0
by Peter Cock
toolshed down? by Geert Vandeweyer
2
by Greg Von Kuster
Inconsistent menus in Galaxy Tool Shed by Peter Cock
3
by Peter Cock
ASN.1 (text and binary) formats in Galaxy & Tool Shed by Peter Cock
10
by Peter Cock
Output external file stored outside galaxy-dist dir by veniceJuanillas
0
by veniceJuanillas
Galaxy Keeps Freezing by Kim Spradling
1
by Jennifer Jackson
Installing FreeBayes via Toolshed: Tool dependency installation error by Iry Witham
5
by Daniel Blankenberg
Re: toolshed gives internal server error by Greg Von Kuster
2
by Mattias
SnpEff Ver 3.1 produces 'no peek' results by Iry Witham
0
by Iry Witham
BLAST Database error: No alias or index file found by Mike Dyall-Smith
7
by Peter Cock
Adding data sources in the main galaxy instance by Fingerman, Ian (NIH/...
4
by Peter Cock
Creating multiple datasets in a libset by rdlecler
6
by Dannon Baker-2
print out workflow execution commands! by Hakeem Almabrazi
5
by Dannon Baker-2
Galaxy API prob with HTTP_REMOTE_USER by Fabien
15
by Dannon Baker-2
Tophat for Illumina is not running by lilach noy
1
by Adam Brenner
Bug or design? Unit tests use *.loc rather than *.loc.sample by Peter Cock
0
by Peter Cock
Teaching using Galaxy by David Joly
6
by hackdna
Using conditional parameters in unit tests by Peter Cock
7
by Peter Cock
Visually differentiate the main and test Tool Shed by Peter Cock
2
by Dave Bouvier
Re: gff installation failed with easy_install by Brad Chapman
1
by Mic
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