Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Re: toolshed gives internal server error by Greg Von Kuster
2
by Mattias
SnpEff Ver 3.1 produces 'no peek' results by Iry Witham
0
by Iry Witham
BLAST Database error: No alias or index file found by Mike Dyall-Smith
7
by Peter Cock
Adding data sources in the main galaxy instance by Fingerman, Ian (NIH/...
4
by Peter Cock
Creating multiple datasets in a libset by rdlecler
6
by Dannon Baker-2
print out workflow execution commands! by Hakeem Almabrazi
5
by Dannon Baker-2
Galaxy API prob with HTTP_REMOTE_USER by Fabien
15
by Dannon Baker-2
Tophat for Illumina is not running by lilach noy
1
by Adam Brenner
Bug or design? Unit tests use *.loc rather than *.loc.sample by Peter Cock
0
by Peter Cock
Teaching using Galaxy by David Joly
6
by hackdna
Using conditional parameters in unit tests by Peter Cock
7
by Peter Cock
Visually differentiate the main and test Tool Shed by Peter Cock
2
by Dave Bouvier
Re: gff installation failed with easy_install by Brad Chapman
1
by Mic
Command Line Tool for Creating New Users by Adam Brenner
6
by burdettn
Galaxy Workflow Input Problem by Amanda Dupuy
1
by Dannon Baker-2
Galaxy hg repository problem "abort: path ... traverses symbolic link" by Peter Cock
10
by Lance Parsons
Blast Errors by cganote@iu.edu
6
by Peter Cock
Galaxy, CloudMan & nginx 1.4.0 by John Chilton
0
by John Chilton
Environment variables by Matthias Zytnicki
12
by Matthias Zytnicki
/bin/sh: 1: filename: not found by Ramon Tiburski
4
by Ramon Tiburski
Speed up the galaxy by 泽 蔡
19
by Langhorst, Brad
TestToolShed out of date? (not running unit tests) by Peter Cock
16
by Peter Cock
GalaxyAdmins Group: Future Directions? by Dave Clements-2
9
by Peter Cock
Merging files: Error merging filesglobal name 'shutil' is not defined by Peter Cock
2
by Peter Cock
traceback - local error? by Langhorst, Brad
1
by Jeremy Goecks
Puzzling test failure with data_column parameter by Peter Cock
3
by Peter Cock
Output a file stored within a server directory to the current history in galaxy by veniceJuanillas
0
by veniceJuanillas
Run Jobs as Real User - Unable to get working with Drmaa (SGE) and job_conf.xml by Adam Brenner
2
by Adam Brenner
Problem using FTP upload by Jillian Rowe
5
by Adam Brenner
ToolShed test complaining core bundled test file is missing by Peter Cock
2
by Peter Cock
ToolShed test failure, "blastxml" ItemNotFoundError by Peter Cock
2
by Peter Cock
Automatics Tool Shed tests - failed dependency installation? by Peter Cock
5
by Peter Cock
Problem uploading file !! by Nishant THAKUR
2
by Björn Grüning
download URLs limited to twelve? by Shantanu Pavgi
0
by Shantanu Pavgi
directory copies as zero-length file from job_working_directory? by Nikhil Joshi-2
2
by rdlecler
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