Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
symlink to june_2007_style by Robert Baertsch-2
2
by Peter Cock
snpEff on Galaxy by rdlecler
0
by rdlecler
Re: Improving Administrative Data Clean Up (pgcleanup.py vs cleanup_datasets.py) by Lance Parsons
0
by Lance Parsons
Fwd: [Gmod-announce] 2013 GMOD Summer School: Apply now! by Dave Clements-2
0
by Dave Clements-2
Reports Web Application fails to start (unable to import TracksterConfig) by Lance Parsons
1
by Dannon Baker-2
Bug report and patch for <version_command> whitespace by Peter Cock
2
by Peter Cock
Unable to finish job by Ramon Tiburski
3
by Nate Coraor (nate@bx...
Re: [galaxy-user] Put an apache password on galaxy? by Nate Coraor (nate@bx...
2
by Lee Katz
Local Galaxy Install - Multiple Job Handlers - Uploads waiting to run endlessly by Adam Brenner
3
by Adam Brenner
(no subject) by db402
3
by Dave Bouvier
Re: Toolshed errors by Greg Von Kuster
1
by Greg Von Kuster
the release_2013.04.01 update crashes our galaxy server by Christophe Antoniews...
3
by James Taylor
where the log in information saved? by shenwiyn
3
by James Taylor
Tophat didn't run by Sarah Maman-2
5
by Sarah Maman-2
Broken tools ids from ./run_functional_tests.sh -list by Peter Cock
4
by Peter Cock
drmaa and JSV by jftaly
0
by jftaly
Research in Genomics by Twaha Mlwilo
0
by Twaha Mlwilo
tasks (parralelism) and from_work_dir bug by Hagai
1
by Jeremy Goecks
Trouble with Toolshed on MySQL by Rob Hooft
1
by Hans-Rudolf Hotz
heatmap capabilities! by Hakeem Almabrazi
1
by Carl Eberhard
Dataset diskspace useage by Alexander Kurze
1
by Carl Eberhard
negative user data usage by Geert Vandeweyer-3
2
by Carl Eberhard
Setting extension of file names generated by Galaxy by Holtgrewe, Manuel
1
by Peter Cock
"Local install" of Galaxy Tool by Holtgrewe, Manuel
5
by Björn Grüning
adding datatypes in tool xml by Robert Baertsch
2
by Björn Grüning
How can I creating a tool in C++ by Ramon Tiburski
1
by Björn Grüning
Why Galaxy? What the advantages? by Ramon Tiburski
1
by rodrigo.faccioli
Bowtie2 and Tophat2 versions by Lance Parsons
1
by Langhorst, Brad
resubmit a job if the node fails by zhengqiu cai
2
by Dannon Baker-2
How to be an admin? by Tobias Hohenaur
9
by Tobias Hohenaur
problem with BWA by Jennifer Jackson
0
by Jennifer Jackson
setup grid engine by Jingzhi Zhu
4
by Jingzhi Zhu
Dataset generation errors by Ramon Tiburski
0
by Ramon Tiburski
galaxy local installation by Yinan Wan
1
by Nate Coraor (nate@bx...
How to test DRMAA configuration? by Joshua Orvis
4
by Nate Coraor (nate@bx...
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