Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Setting extension of file names generated by Galaxy by Holtgrewe, Manuel
1
by Peter Cock
"Local install" of Galaxy Tool by Holtgrewe, Manuel
5
by Björn Grüning
adding datatypes in tool xml by Robert Baertsch
2
by Björn Grüning
How can I creating a tool in C++ by Ramon Tiburski
1
by Björn Grüning
Why Galaxy? What the advantages? by Ramon Tiburski
1
by rodrigo.faccioli
Bowtie2 and Tophat2 versions by Lance Parsons
1
by Langhorst, Brad
resubmit a job if the node fails by zhengqiu cai
2
by Dannon Baker-2
How to be an admin? by Tobias Hohenaur
9
by Tobias Hohenaur
problem with BWA by Jennifer Jackson
0
by Jennifer Jackson
setup grid engine by Jingzhi Zhu
4
by Jingzhi Zhu
Dataset generation errors by Ramon Tiburski
0
by Ramon Tiburski
galaxy local installation by Yinan Wan
1
by Nate Coraor (nate@bx...
How to test DRMAA configuration? by Joshua Orvis
4
by Nate Coraor (nate@bx...
Custom tool need a directory as input by David Angot
1
by Björn Grüning
How to distribute our local installation via git(logistics) by Perez, Ricardo
0
by Perez, Ricardo
GCC2013 Talk Abstract Submission closes this Friday by Dave Clements-2
0
by Dave Clements-2
removing inputs from a pipeline by philippe
1
by Dannon Baker-2
Galaxy + ProFTPd - proper configuration / uploaded files not accessible in Galaxy by galapah
2
by galapah
History periodically disappears in AWS Cloudman installation by Greg Edwards
1
by Carl Eberhard
April 8, 2013 Galaxy Security Release by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Pgp Keys not found error nebc.nerc.ac.uk by Zeeshan Ali Shah
2
by Brad Chapman
Galaxy dont work on my Bio-Linux by BrozPetr
1
by Nate Coraor (nate@bx...
REST API: upload of dataset to history possible ? by Marc Logghe
4
by John Chilton
How to show alert message to user when running a tool in galaxy by BingXin Lu
2
by BingXin Lu
PBS_Python Unable to submit jobs by cganote@iu.edu
2
by cganote@iu.edu
core dump after trying to view data by jjevans
0
by jjevans
Running two Galaxy instances on the same Torque cluster by Josh Nielsen
0
by Josh Nielsen
Call for papers for a special GCC2013 and Galaxy series in GigaScience by Dave Clements-2
0
by Dave Clements-2
What is up with the multiple dataset selection for workflows by thondeboer
4
by John Chilton
gene annotation file (gtf) by Hagai
3
by Hans-Rudolf Hotz
How to show alert message to user when running a tool in galaxy by BingXin Lu
2
by Peter Cock
Is there a way to determine if a tool was run from the UI or from a Workflow step? by thondeboer
1
by Dannon Baker-2
Example for DRMAA in new jobs_conf.xml example file incorrect. It's "DRMAAJobRunner" not "DRMAARunner" by thondeboer
1
by Nate Coraor (nate@bx...
Re: [galaxy-bugs] Error message when trying to dowload Manhattan plot using the web version by CKannas
0
by CKannas
(no subject) by auguste aurelie
0
by auguste aurelie
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