Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Toolshed - Installation of static files by Lance Parsons
4
by Greg Von Kuster
Setting up SSL on CloudMan EC2 by rdlecler
0
by rdlecler
Running with Multiple DRMs by cganote@iu.edu
0
by cganote@iu.edu
Trinity wrapper not working on local installation by Raj Ayyampalayam
3
by Raj Ayyampalayam
Missing from tool shed - lost in migration or never uploaded? by Peter Cock
2
by Peter Cock
Circster Visualization by Merella Stefania
4
by Merella Stefania
Re: FTP upload - symlink to uploaded data by Rob Hooft
1
by Joachim Jacob
Tool run on cluster returns error state on clean install by cganote@iu.edu
2
by cganote@iu.edu
alphabetically sorted references from admin tool -> numerically sorted? by Langhorst, Brad
0
by Langhorst, Brad
Question about use of <options> tag and from_dataset with non-text data files by Marc F Paterno
0
by Marc F Paterno
best practice to replace the hashing for galaxy-user passwords by Vipin TS
0
by Vipin TS
Multicore by Alexander Kurze-2
3
by Alexander Kurze-2
hello Newbie questions about galaxy and clustering by Jennifer Jackson
0
by Jennifer Jackson
redirection vulnerability via URL injection by Vipin TS
2
by Vipin TS
Manage Local data by SHAUN WEBB
0
by SHAUN WEBB
EBI SRA for local galaxy by Sergei Manakov
1
by Dannon Baker-2
slow history panel? by Langhorst, Brad
1
by James Taylor
Production Servers - Best Practices by rdlecler
1
by John Chilton
Production and Dev server on the same database. by Ted Goldstein-2
3
by Assaf Gordon
Boolean value issue with conditional tags by Alexandre Loywick
1
by Peter Cock
user-specific tool panel by Jens
1
by Jeremy Goecks
Uploading large data sets from cluster file system for local galaxy install by Raj Ayyampalayam
0
by Raj Ayyampalayam
Updating help text for a tool shed repository by Lance Parsons
11
by Greg Von Kuster
Displaying track into UCSC by Julien SEILER
6
by Julien SEILER
Setting up Cloudman instance by Iry Witham
1
by Dannon Baker-2
Composite Datatype (auto_primary_file) not uploading by CKannas
0
by CKannas
Cannot update Cloudman from a clean install on EC2? by Brian Lin
3
by Dannon Baker-2
workflow parameters by Langhorst, Brad
3
by Daniel Blankenberg
Cloudman on openstack by Zeeshan Ali Shah
1
by Dave Clements-2
customtrack visualisation by SHAUN WEBB
3
by Carl Eberhard
Problems with rsync from datacache.g2.bx.psu.edu/indexes by raramayo
2
by Raj Ayyampalayam
Problem running ncbi_makeblastdb as real user in cluster by Raj Ayyampalayam
8
by Peter Cock
What are wrappers, how can I use this? by Ramon Tiburski
2
by Ramon Tiburski
Some problems setting up a new cloudman instance on AWS by Adam Cohn
5
by Adam Cohn
show urls in csv (in eye mode) by Hagai
5
by Hagai
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