Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Updating help text for a tool shed repository by Lance Parsons
11
by Greg Von Kuster
Displaying track into UCSC by Julien SEILER
6
by Julien SEILER
Setting up Cloudman instance by Iry Witham
1
by Dannon Baker-2
Composite Datatype (auto_primary_file) not uploading by CKannas
0
by CKannas
Cannot update Cloudman from a clean install on EC2? by Brian Lin
3
by Dannon Baker-2
workflow parameters by Langhorst, Brad
3
by Daniel Blankenberg
Cloudman on openstack by Zeeshan Ali Shah
1
by Dave Clements-2
customtrack visualisation by SHAUN WEBB
3
by Carl Eberhard
Problems with rsync from datacache.g2.bx.psu.edu/indexes by raramayo
2
by Raj Ayyampalayam
Problem running ncbi_makeblastdb as real user in cluster by Raj Ayyampalayam
8
by Peter Cock
What are wrappers, how can I use this? by Ramon Tiburski
2
by Ramon Tiburski
Some problems setting up a new cloudman instance on AWS by Adam Cohn
5
by Adam Cohn
show urls in csv (in eye mode) by Hagai
5
by Hagai
Issue with viz of mapped data in Trackster by Joachim Jacob
4
by Joachim Jacob
Different display ratio (Tools, Center & History) by Hagai
0
by Hagai
adding new tools and wrapper validation! by Hakeem Almabrazi
1
by Peter Cock
Deletion of items in flexbar repository by jtilman
1
by Dave Bouvier
Problems with Galaxy-Project since 3/14/2013 update by Zain A Alvi
1
by Jennifer Jackson
Re: [galaxy-announce] GalaxyAdmins meetup on March 20th at 10 AM Central US by Dave Clements-2
0
by Dave Clements-2
Local data for encode tools by juliech
0
by juliech
These tool dependencies are considered orphans by Peter Cock
4
by Peter Cock
Same Problems with Galaxy-Project since 3/14/2013 update by Zain A Alvi
0
by Zain A Alvi
Galaxy LinkedIn Group by Dave Clements-2
0
by Dave Clements-2
FW: ALIGNMENT BCM GENOMICS 2013 - Yassine Rechoum by Ritter, Deborah I
0
by Ritter, Deborah I
two versions of show datasets API call? by Clare Sloggett
2
by Jeremy Goecks
Is parallelism not working with galaxy-central? by Björn Grüning
9
by Peter Cock
SciPy Bioinformatics symposium: abstracts due Wednesday Mar 20th by Brad Chapman
0
by Brad Chapman
Count characters in column by gthyssen
1
by Dannon Baker-2
Re: Issue 634 in galaxy-central: Optional column select arguments? by Peter Cock
0
by Peter Cock
BioBlend: Problem Running Example file by rdlecler
6
by Clare Sloggett
Re: [galaxy-iuc] Tool Dependency Packages by Greg Von Kuster
0
by Greg Von Kuster
hg push to remote tool shed fails with abort: authorization failed by jorrit
3
by jorrit
configure loacl galaxy cluster question! by Hakeem Almabrazi
0
by Hakeem Almabrazi
Login issue with apache proxy by lionel.spinelli
0
by lionel.spinelli
galaxy from subdirectory - new history with a page refresh by Shantanu Pavgi
0
by Shantanu Pavgi
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