Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Serving Galaxy behind apache mod_security by Vipin TS
2
by Vipin TS
Error Report contains STDERR from different job by Eric Enns-2
8
by Carl Eberhard
Server Error when creating Quota by greg-2
0
by greg-2
Creating customized galaxy version for individual users by Akshay Choche
0
by Akshay Choche
Tool Shed examples defining datatype conversion by Peter Cock
3
by Björn Grüning
API - Status 403 Forbidden by rdlecler
2
by Carl Eberhard
Reminder: Galaxy Main & Test Server downtime for hardware relocation Thursday, March 14, 2013 by Jennifer Jackson
0
by Jennifer Jackson
Bam to sam error by Joachim Jacob
0
by Joachim Jacob
Include some XML in <configfiles> tag by David Angot
2
by David Angot
FTP uploading errors and BigWig conversion by Kristin Denise Kerno...
0
by Kristin Denise Kerno...
upload of local file ends up with a broken pipe. by jjevans
3
by Carl Eberhard
Tools and Data by shenwiyn
1
by Jennifer Jackson
Please help with fastx broken pipe by Jorge Sepulveda
1
by Carl Eberhard
Galaxy Main & Test Server downtime for hardware relocation Thursday, March 14, 2013 by Jennifer Jackson
0
by Jennifer Jackson
Galaxy Reports: 'unfinished jobs' seems not to do the job by Joachim Jacob
2
by Joachim Jacob
Installing htseq-count via Toolshed: error installing dependency. by Joachim Jacob
0
by Joachim Jacob
Problem running Tophat for Illumina by greg-2
5
by Jennifer Jackson
Built-in reference genome by Charles Murphy
4
by Charles Murphy
indexes file of Megablast by shenwiyn
0
by shenwiyn
Validating dynamic inputs stream of consciousness by John Chilton
3
by John Chilton
Composite datatype output for Cuffdiff by Jim Johnson-3
13
by James Taylor
How to count the number of Workflow steps? by Richard Park
7
by David Hoover
Proteomics category on test toolshed by iracooke
6
by Greg Von Kuster
Redirect http://usegalaxy.org/community broken? by Peter Cock
1
by Greg Von Kuster
Workflow Actions by Richard Park-2
0
by Richard Park-2
Broken pipe in server by Thomas van Gurp
1
by James Taylor
errors with run_functional_tests.sh by Florence Maurier
1
by Dave Bouvier
Authentication: email addresses are not validated prior to account creation by Vipin TS
4
by James Taylor-4
NCBI rpsblast and rpstblastn for CDD searches etc by Peter Cock
0
by Peter Cock
GALAXY LOCAL INSTALLATION: Tools and Data by Rafael Hernández
4
by shenwiyn
Re: [galaxy-user] Setting up galaxy local server by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Manage API keys in admin panel by Rémy Dernat
2
by Rémy Dernat
Support Question by Jennifer Jackson
0
by Jennifer Jackson
Search software on public Galaxy servers by Bernardo Bello
4
by Jeremy Goecks
Re: [External] Re: data from galaxy by Dannon Baker-2
3
by Kathryn
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