Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Running unit tests on [dev] by Maximilian Friedersd...
2
by Maximilian Friedersd...
Talk abstracts for Galaxy Australasia Meeting (GAMe 2017) are due 30 Nov by Dave Clements-2
0
by Dave Clements-2
Mapping LDAP groups to Galaxy groups/roles by Ignacio EGUINOA
0
by Ignacio EGUINOA
Error running bedgraph to bigwig on local galaxy by evan clark
2
by evan clark
Is there demand for rate limiting in Galaxy? by Maximilian Friedersd...
3
by Martin Čech
Sharing galaxy defined workflow with link leads to Internal Server Error by NGS & Bioinformatics...
0
by NGS & Bioinformatics...
Error after loading up bebatut MetaPhlAn2 to our local Galaxy instance by Dooley, Damion
0
by Dooley, Damion
Code File Execution by Katherine Beaulieu
2
by Aysam Guerler
Running script prior to initial login by evan clark
0
by evan clark
More problems installing Galaxy by marcelo_t
2
by marcelo_t
Using pbs-python with glibc version 2.12 by David Lee
3
by Nate Coraor (nate@bx...
Galaxy on the Cloud with Openstack by Katherine Beaulieu
3
by Enis Afgan-3
Restart Galaxy without interruption by Gildas Le Corguillé
3
by Rémy Dernat
planemo with --docker and --conda_dependency_resolution by Steve Cassidy
0
by Steve Cassidy
Elastic Bean Stalk by ryang
1
by Martin Čech
Reporting issues for the wiki? e.g. universe_wgsi.ini still widely used by Peter Cock
3
by Dannon Baker-2
purge dataset at a different location by Mark Xiao
1
by Dannon Baker-2
conda management of tools dependent on python3 by Wolfgang Maier
9
by Vincent Cahais
Compilation of package_bioconductor_limma_3_28_10 crash : source unavailable ! by Emmanuel Quemener
0
by Emmanuel Quemener
upload problem for http://deeptools.ie-freiburg.mpg.de by Robert Hansel-Hertsc...
0
by Robert Hansel-Hertsc...
Errors when building Galaxy RNA-Seq Docker Image by Stephen Kelly
1
by Björn Grüning-3
Last Call for GMOD talks at PAG by Scott Cain
0
by Scott Cain
galaxy - velvet devteam revision 08256557922f by fernandez Edgar
1
by fernandez Edgar
Installing ToolShed Tools into Galaxy via Browser Interface Exception Thrown by Yip, Miu ki
5
by Yip, Miu ki
<version_command> $__tool_directory__ not working by D K
0
by D K
Galaxy+Slurm (with elastic cluster) error: "Job output not returned from cluster" by Marco Tangaro
1
by Enis Afgan-3
IEs and fancy visualisations by Björn Grüning-3
0
by Björn Grüning-3
Compiling dependencies in galaxy yields error by evan clark
4
by evan clark
Local Galaxy Workflow Sharing by Rachel Bell
1
by John Chilton-4
November 2016 Galactic News by Dave Clements-2
0
by Dave Clements-2
Error for Picard CollectInsertSizeMetrics by Raphenya, Amogelang
0
by Raphenya, Amogelang
Job_id in a galaxy tool by Katherine Beaulieu
1
by John Chilton-4
Local galaxy samtools HISAT 2 issue by evan clark
1
by John Chilton-4
galaxy venv problem by Rui Wang
1
by Nicola Soranzo-2
Call for GMOD talks at PAG by Scott Cain
0
by Scott Cain
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