Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Adding packages to depot.galaxyproject.org by Peter Cock
5
by Peter Cock
pop up on click by Mohamed Kassam
0
by Mohamed Kassam
conversion issue by Rathert, Philipp, Dr...
5
by Rathert, Philipp, Dr...
uploading multi-file archives and creation of potentially large collections by Stephan Oepen
3
by John Chilton-4
provide a field to upload a file as part of tool input by ryang
2
by Björn Grüning-3
Command line building by Katherine Beaulieu
2
by Katherine Beaulieu
Retrieving bam index file for visualization outside of Galaxy by Ouellette, Scott
1
by Dannon Baker-2
Removing job in error state by ryang
2
by ryang
Galaxy URL and api key tool config by Katherine Beaulieu
1
by Eric Rasche-2
Deprecated code file tag by Katherine Beaulieu
2
by Katherine Beaulieu
tool runner by Mohamed Kassam
1
by Katherine Beaulieu
Galaxy history UI suggestion by Bongsoo Park
1
by Hans-Rudolf Hotz
Possible bug in drmaa and Galaxy? by Raymond Wan
2
by Raymond Wan
Fwd: Galaxy Blast by Peter Cock
3
by Peter Cock
Add url in help of tool xml by Mohamed Kassam
2
by Peter Cock
Fwd: Returning BLAST datatypes and DB loc files to Galaxy core? by Peter Cock
3
by Peter Cock
Remote user auth and API by Sarah DIEHL-3
2
by Sarah DIEHL-3
run-as-user and Galaxy 16.04 by Peter van Heusden
0
by Peter van Heusden
ask about restart Galaxy(uwsgi) with supervisor by Mark Xiao
0
by Mark Xiao
dataset collection datatype by Cristel Thomas
2
by Cristel Thomas
Recommended Hardware for Galaxy by Durdevic, Marija
1
by Björn Grüning-3
Galaxy in Docker and nginx by Yip, Miu ki
2
by Björn Grüning-3
August Galaxy News by Dave Clements-2
0
by Dave Clements-2
Information about SparkGalaxy by Léo Biscassi
0
by Léo Biscassi
possible bug found - unable to log out of impersonated user when external authentication enabled by ryang
5
by Dannon Baker-2
Trying to understand python dependencies by Tony Schreiner
4
by Tony Schreiner
Password Parameter Opinions by Katherine Beaulieu
2
by Eric Rasche-2
TestToolShed down? by Peter Cock
2
by Peter Cock
workflow problems by Cristel Thomas
4
by Cristel Thomas
Info Page after tool execution by Katherine Beaulieu
2
by Katherine Beaulieu
Papers that cite Galaxy workflows by Steve Cassidy
3
by Steve Cassidy
DOS attack launched from our Galaxy instance by Keith Suderman
2
by Keith Suderman
Fwd: Immersive Approaches to Biological Data Visualization CSHL Course December 2016 by James Taylor
0
by James Taylor
Problem with samtools dependencies by Raymond Wan
0
by Raymond Wan
This job failed for reasons that could not be determined. by Ulf
2
by Ulf
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