Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
ansible install tools: tools not in section by Tamir,Ido
2
by Tamir,Ido
GalaxyAdmins online meetup this Thursday: Dynamic Job expansion: Experiences using Makeflow in Galaxy by Dave Clements-2
1
by Dave Clements-2
liftOver output database error by Sarah DIEHL-3
1
by Nicola Soranzo-2
Galaxy Workflow delete intermediate files by D K
2
by D K
Consuming dataset collections by Steve Cassidy
3
by John Chilton-4
problems with 'action type="metadata" name="dbkey"' in tool xml by Hans-Rudolf Hotz
7
by Hans-Rudolf Hotz
Error running JBrowse by Raymond Wan
2
by Raymond Wan
Adding a download link to the "Download or Export Workflow" page with load balancing by Alex Rodriguez-2
4
by Alex Rodriguez-2
Travis CI for Galaxy repositories? by Peter van Heusden
1
by Björn Grüning-3
Doubled arguments from loc files in tests by Peter Cock
1
by Peter Cock
Connecting LDAP with Galaxy by Yip, Miu ki
11
by Tiago Antao
view details not working by Vincent Cahais
4
by Vincent Cahais
External user auth and API by Sarah DIEHL-3
6
by Eric Rasche-2
Adding packages to depot.galaxyproject.org by Peter Cock
5
by Peter Cock
pop up on click by Mohamed Kassam
0
by Mohamed Kassam
conversion issue by Rathert, Philipp, Dr...
5
by Rathert, Philipp, Dr...
uploading multi-file archives and creation of potentially large collections by Stephan Oepen
3
by John Chilton-4
provide a field to upload a file as part of tool input by ryang
2
by Björn Grüning-3
Command line building by Katherine Beaulieu
2
by Katherine Beaulieu
Retrieving bam index file for visualization outside of Galaxy by Ouellette, Scott
1
by Dannon Baker-2
Removing job in error state by ryang
2
by ryang
Galaxy URL and api key tool config by Katherine Beaulieu
1
by Eric Rasche-2
Deprecated code file tag by Katherine Beaulieu
2
by Katherine Beaulieu
tool runner by Mohamed Kassam
1
by Katherine Beaulieu
Galaxy history UI suggestion by Bongsoo Park
1
by Hans-Rudolf Hotz
Possible bug in drmaa and Galaxy? by Raymond Wan
2
by Raymond Wan
Fwd: Galaxy Blast by Peter Cock
3
by Peter Cock
Add url in help of tool xml by Mohamed Kassam
2
by Peter Cock
Fwd: Returning BLAST datatypes and DB loc files to Galaxy core? by Peter Cock
3
by Peter Cock
Remote user auth and API by Sarah DIEHL-3
2
by Sarah DIEHL-3
run-as-user and Galaxy 16.04 by Peter van Heusden
0
by Peter van Heusden
ask about restart Galaxy(uwsgi) with supervisor by Mark Xiao
0
by Mark Xiao
dataset collection datatype by Cristel Thomas
2
by Cristel Thomas
Recommended Hardware for Galaxy by Durdevic, Marija
1
by Björn Grüning-3
Galaxy in Docker and nginx by Yip, Miu ki
2
by Björn Grüning-3
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