Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
August Galaxy News by Dave Clements-2
0
by Dave Clements-2
Information about SparkGalaxy by Léo Biscassi
0
by Léo Biscassi
possible bug found - unable to log out of impersonated user when external authentication enabled by ryang
5
by Dannon Baker-2
Trying to understand python dependencies by Tony Schreiner
4
by Tony Schreiner
Password Parameter Opinions by Katherine Beaulieu
2
by Eric Rasche-2
TestToolShed down? by Peter Cock
2
by Peter Cock
workflow problems by Cristel Thomas
4
by Cristel Thomas
Info Page after tool execution by Katherine Beaulieu
2
by Katherine Beaulieu
Papers that cite Galaxy workflows by Steve Cassidy
3
by Steve Cassidy
DOS attack launched from our Galaxy instance by Keith Suderman
2
by Keith Suderman
Fwd: Immersive Approaches to Biological Data Visualization CSHL Course December 2016 by James Taylor
0
by James Taylor
Problem with samtools dependencies by Raymond Wan
0
by Raymond Wan
This job failed for reasons that could not be determined. by Ulf
2
by Ulf
cannot extract genomic dna by Alexandre Maucuer
2
by Alexandre Maucuer
switching from Apache to "auth_conf" to handle external user authentication via LDAP by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
activate authentication through LDAP using the auth_conf file by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
Loading tool config file by Katherine Beaulieu
6
by Katherine Beaulieu
BLAST only using single core by Shane Sturrock
4
by Shane Sturrock
Galaxy, Docker Containers, and Installing tools not in Toolshed by Yip, Miu ki
5
by Björn Grüning-3
errors when updating tools by Sarah DIEHL-3
3
by Sarah DIEHL-3
Uploads not working in local Galaxy installation by Adrià Cereto i Massa...
1
by Adrià Cereto i Massa...
New galaxy parameter type by Katherine Beaulieu
5
by Mohamed Kassam
Issue creating cluster by Cameron Buckley
0
by Cameron Buckley
cognoma by Calvin Morrison
2
by Casey Greene
jupyter + apache proxy + SSL by vazovn
0
by vazovn
Implementing iRODS with Galaxy by Katherine Beaulieu
1
by Katherine Beaulieu
Suggestion for Structural Variant Analysis onto Galaxy Main by Wong, Orlando
1
by Björn Grüning-3
planemo shed_create bug? on planemo/server docker image by Steve Cassidy
3
by Björn Grüning-3
package_cython_0_20_1 by Rathert, Philipp, Dr...
2
by Rathert, Philipp, Dr...
default number of concurrent jobs by Ulf
4
by Hans-Rudolf Hotz
Get the username and password of a user by Mohamed Kassam
1
by Peter Cock
hide password xml tag by Mohamed Kassam
2
by Mohamed Kassam
Amazon Instance Types for Galaxy by Lapointe, David
1
by Enis Afgan-3
Swiss German Galaxy Tour/Day 2016 - Freiburg (Germany), 20/21 October by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
Writing test for dataset collection by Cristel Thomas
3
by Cristel Thomas
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