Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
cannot extract genomic dna by Alexandre Maucuer
2
by Alexandre Maucuer
switching from Apache to "auth_conf" to handle external user authentication via LDAP by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
activate authentication through LDAP using the auth_conf file by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
Loading tool config file by Katherine Beaulieu
6
by Katherine Beaulieu
BLAST only using single core by Shane Sturrock
4
by Shane Sturrock
Galaxy, Docker Containers, and Installing tools not in Toolshed by Yip, Miu ki
5
by Björn Grüning-3
errors when updating tools by Sarah DIEHL-3
3
by Sarah DIEHL-3
Uploads not working in local Galaxy installation by Adrià Cereto i Massa...
1
by Adrià Cereto i Massa...
New galaxy parameter type by Katherine Beaulieu
5
by Mohamed Kassam
Issue creating cluster by Cameron Buckley
0
by Cameron Buckley
cognoma by Calvin Morrison
2
by Casey Greene
jupyter + apache proxy + SSL by vazovn
0
by vazovn
Implementing iRODS with Galaxy by Katherine Beaulieu
1
by Katherine Beaulieu
Suggestion for Structural Variant Analysis onto Galaxy Main by Wong, Orlando
1
by Björn Grüning-3
planemo shed_create bug? on planemo/server docker image by Steve Cassidy
3
by Björn Grüning-3
package_cython_0_20_1 by Rathert, Philipp, Dr...
2
by Rathert, Philipp, Dr...
default number of concurrent jobs by Ulf
4
by Hans-Rudolf Hotz
Get the username and password of a user by Mohamed Kassam
1
by Peter Cock
hide password xml tag by Mohamed Kassam
2
by Mohamed Kassam
Amazon Instance Types for Galaxy by Lapointe, David
1
by Enis Afgan-3
Swiss German Galaxy Tour/Day 2016 - Freiburg (Germany), 20/21 October by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
Writing test for dataset collection by Cristel Thomas
3
by Cristel Thomas
Motif Alignment and Search Tool - MAST by KIRILL PANKOV
0
by KIRILL PANKOV
user login web page with welcome one by Nikolaos Tur
0
by Nikolaos Tur
showing progress on running tasks by ryang
4
by Raymond Wan
Can't stop uwsgi processes with supervisod by Marco Tangaro
0
by Marco Tangaro
Metadata access using tool config by Katherine Beaulieu
4
by Von Kuster, Greg
Python tool wrapper with multiple input and output files by Marco Tangaro
3
by Marius van den Beek
Auto detection of output format Galaxy custom tool by Katherine Beaulieu
11
by Peter Cock
Mapping requirements to conda recipe names (granularity?) by Peter van Heusden
1
by John Chilton-4
Using operations on multiple datasets by D K
2
by Von Kuster, Greg
Re: Building tool dependencies by Matthias De Smet
3
by Matthias De Smet
July Galactic News: GCC2016, GCC2017(!), Admin/Dev Trainings, GAMe 2017! by Dave Clements-2
0
by Dave Clements-2
Error while running Cuffdiff by Patel, Ravi Kanu
0
by Patel, Ravi Kanu
question using PICRUSt COG vs. KEGG by Ana Weil
0
by Ana Weil
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