Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8957)
Replies Last Post Views
Moving Shared Data Library Folders by D K
1
by Devon Ryan
DeepTools installation error by Timo Janßen
9
by Previti
conda problem with R libraries by Jochen
0
by Jochen
Python modules not found when starting with init system by Maximilian Friedersd...
4
by Abbott, James
new installation galaxy-17.05 - Uncaught error. by fernandez Edgar
9
by Aysam Guerler
Galaxy Dinner @ ISMB/ECCB/BOSC 2017 by Dave Clements-2
0
by Dave Clements-2
How to FTP files on Dockerized version of Galaxy instance running on DC/OS server? by Md. Rezaul Karim
10
by Devon Ryan
dexseq pysam error by Beginner TI
1
by Beginner TI
Mac OS X, edgeR installtion by Bongsoo Park-2
0
by Bongsoo Park-2
Singularity Container forks ? by Nikos Nikoloutsakos
6
by John Chilton-4
Admin Training Poll: Where should Galaxy Admin Training be held next? by Dave Clements-2
1
by Dave Clements-2
AD Intergration by John Chen
11
by Chen, John (IT)
drmaa resubmission by Matthias Bernt
2
by Matthias Bernt
drmaa job status by Matthias Bernt
3
by Matthias Bernt
Galaxy slurm error by evan clark
3
by Nate Coraor (nate@bx...
Galaxy Job Error by evan clark
3
by Marius van den Beek
Release of Galaxy 17.05 by Jennifer Hillman-Jac...
0
by Jennifer Hillman-Jac...
Paste/Fetch data, indicate filename before download data (default = Pasted Entry) by SAPET, Frederic
2
by SAPET, Frederic
composite datatypes: uploading and optional files by Peter van Heusden
1
by Björn Grüning-3
galaxy & DFARS by Eric Rasche-3
0
by Eric Rasche-3
bwa_mem and "-t" option by David Kovalic-3
5
by David Kovalic-3
Large Number of jobs Failing following error by Evan
0
by Evan
Issue with GATK2 on Galaxy Repository. by OLABODE OLUWASEUN AJ...
2
by Nicola Soranzo-2
jupyter notebook / nginx / ssl by Cristel Thomas
0
by Cristel Thomas
Issue with job_name, UnicodeDecodeError in drmaa by Raj Ayyampalayam
7
by Peter Cock
protein ligand docking by Matthias Bernt
0
by Matthias Bernt
python subprocess OSError when running bwa-mem by Georgios Nikolis
3
by Hans-Rudolf Hotz
Decrease Galaxy polling of slurm? by Philip Blood
2
by Philip Blood
vcftools - errors running vcf-merge by richjp
0
by richjp
cluster access by Matthias Bernt
4
by Matthias Bernt
OpenBabel Requirements by Matthias Bernt
6
by Matthias Bernt
Which ID ('id', 'workflow_id', and 'dataset_id') should be used? by Aarthi Mohan
2
by Aarthi Mohan
Problem with dataset not being cleaned. by C. Ch.
0
by C. Ch.
Project Publication Reference Tracking Tool -- are you interested in? by Krzysztof Kutt
2
by Dave Clements-2
location of history id by Aarthi Mohan-2
1
by John Chilton-4
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