Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9000)
Replies Last Post Views
htseq-count/deseq2 conda dependency issues by Peter Briggs
2
by Peter Briggs
Job output not returned from Cluster Error by Yip, Miu ki
1
by Devon Ryan-2
Monitoring Dashboard for Galaxy by evan clark
1
by Hans-Rudolf Hotz
Data manager for ncbi_blast_plus in the main tool shed? by David Kovalic
0
by David Kovalic
Samtools problem in Docker by Deepak Tanwar
5
by Björn Grüning-3
Tool Shed tools - Uncaught Error by Yip, Miu ki
0
by Yip, Miu ki
Bowtie2 index building by Deepak Tanwar
5
by Deepak Tanwar
Data manager for ncbi_blast_plus in the main tool shed? by David Kovalic
1
by Peter Cock
Installing Galaxy, Conda and Python by Lachlan Musicman
1
by Lachlan Musicman
Galaxy Project @ Johns Hopkins is hiring by Dave Clements-2
0
by Dave Clements-2
numpy problem by Matthias Bernt
2
by John Chilton-4
openms python3 & print by Matthias Bernt
4
by Matthias Bernt
openms again by Matthias Bernt
0
by Matthias Bernt
install tools to https galaxy instance with insecure ssl? by Evan Bollig PhD
0
by Evan Bollig PhD
controlling dataset formats in output collections by Wolfgang Maier
0
by Wolfgang Maier
Venn diagram example data by Steven Shen
3
by Peter Cock
galaxy-tours : putting the box next to the preview display by Hans-Rudolf Hotz
1
by Hans-Rudolf Hotz
Accessing only to "not deleted" history datasets from a visualization plugin by Lisa Perus
0
by Lisa Perus
genome upload by Marion Cerri
1
by Jennifer Hillman-Jac...
Uncaught Error When Installing Tools From Toolshed by Van Der Pol William
2
by Adrià Cereto i Massa...
Creating a tool dependency packages by Delisle Lucille
4
by Devon Ryan
Galaxy @ ISMB/ECCB/BOSC 2017: Talks, posters, dinner, BoF, and tutorial by Dave Clements-2
0
by Dave Clements-2
internal server error when creating or editing a workflow by Nadia Goué
0
by Nadia Goué
How to install Charts in command line ? by Steven Shen
4
by Steven Shen
Adding a visualization plugin to a galaxy local toolshed by Lisa Perus
2
by Lisa Perus
Bugfix - Summary Statistics Script - Python incompatibility by Previti
0
by Previti
inconsistent state set for workflow submissions [using bioblend] by Aarthi Mohan
1
by John Chilton-4
Cleaning up old exported histories by Lance Parsons
0
by Lance Parsons
problem with column options by fabien gogé
1
by Aysam Guerler
Issue with SLURM-DRMAA by Dawes, Gwen
2
by Nate Coraor (nate@bx...
tool and planemo problems by Matthias Bernt
6
by Peter Cock
Issues with "bamtools split", running jobs don't show up in history (and fail after several hours) by Previti
0
by Previti
Java memory requirements for Picard index? by Previti
2
by Previti
Shiny in Galaxy by Mohamed Kassam
6
by Hans-Rudolf Hotz
any introduce for how Mako and JavaScript work in galaxy? by Steven Shen
3
by Steven Shen
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