Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9016)
Replies Last Post Views
conda problem by Matthias Bernt
2
by Matthias Bernt
[hxr@hx42.org: [SECURITY] 2017-08 security patch. Update now!] by E. Rasche
0
by E. Rasche
Error while building reference genome index by Laurent Fournier
0
by Laurent Fournier
Re: galaxy-dev Digest, Vol 134, Issue 19 by Matthias Bernt
0
by Matthias Bernt
Error with run as real user, unable to read file by Evan Clark-2
0
by Evan Clark-2
Firefox drag and drop not working by Jochen
3
by Aysam Guerler
job_working_directory: no subdirectories created by D K
0
by D K
toolshed and testtoolshed by Matthias Bernt
2
by Björn Grüning-3
Conda dependency install problems for DESeq2 tool by Peter Briggs
2
by Peter Briggs
Groovy tool for galaxy by Anshul Tak
4
by Keith Suderman
Image in tool XML "help" section only renders when installed from toolshed? by Peter Briggs
6
by Peter Briggs
User Preferences not rendering view, insetting galaxy UI by evan clark
2
by Aysam Guerler
Python Communication by evan clark
2
by evan clark
Gateways 2017: Early-bird registration open until Sept. 1; register by Th., Oct. 12 by Katherine Lawrence
0
by Katherine Lawrence
Galaxy Copying New Files by evan clark
0
by evan clark
Galaxy Conda resolver install Issue by evan clark
2
by Matthias Bernt
htseq-count/deseq2 conda dependency issues by Peter Briggs
2
by Peter Briggs
Job output not returned from Cluster Error by Yip, Miu ki
1
by Devon Ryan-2
Monitoring Dashboard for Galaxy by evan clark
1
by Hans-Rudolf Hotz
Data manager for ncbi_blast_plus in the main tool shed? by David Kovalic
0
by David Kovalic
Samtools problem in Docker by Deepak Tanwar
5
by Björn Grüning-3
Tool Shed tools - Uncaught Error by Yip, Miu ki
0
by Yip, Miu ki
Bowtie2 index building by Deepak Tanwar
5
by Deepak Tanwar
Data manager for ncbi_blast_plus in the main tool shed? by David Kovalic
1
by Peter Cock
Installing Galaxy, Conda and Python by Lachlan Musicman
1
by Lachlan Musicman
Galaxy Project @ Johns Hopkins is hiring by Dave Clements-2
0
by Dave Clements-2
numpy problem by Matthias Bernt
2
by John Chilton-4
openms python3 & print by Matthias Bernt
4
by Matthias Bernt
openms again by Matthias Bernt
0
by Matthias Bernt
install tools to https galaxy instance with insecure ssl? by Evan Bollig PhD
0
by Evan Bollig PhD
controlling dataset formats in output collections by Wolfgang Maier
0
by Wolfgang Maier
Venn diagram example data by Steven Shen
3
by Peter Cock
galaxy-tours : putting the box next to the preview display by Hans-Rudolf Hotz
1
by Hans-Rudolf Hotz
Accessing only to "not deleted" history datasets from a visualization plugin by Lisa Perus
0
by Lisa Perus
genome upload by Marion Cerri
1
by Jennifer Hillman-Jac...
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