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Galaxy Development List Archive

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Galaxy

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (8794)
Replies Last Post Views
Installation of packages failing by jamesp
6
by Peter Briggs
Speedup Galaxy by Jochen
5
by Nate Coraor (nate@bx...
Galaxy Security Vulnerability - Arbitrary code execution by Nate Coraor (nate@bx...
3
by Daniel Blankenberg
Announcing the October 2016 (v16.10) Galaxy Release by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
devteam dropped support for installing tool dependencies from toolshed? by Peter Briggs
3
by Björn Grüning-3
New datatypes with code dependencies by Cristel Thomas
2
by Cristel Thomas
multiple datatypes input in 16.07 by Cristel Thomas
11
by Aysam Guerler
Testing workflows by Eric Rasche-2
1
by Jelle Scholtalbers
Addind new datatype - best practice by Floreline TOUCHARD
1
by Björn Grüning-3
Broken logo 'src' in masthead for Galaxy 16.07 served from subdirectory by Peter Briggs
2
by Peter Briggs
Testing updated NCBI BLAST+ wrappers for version 2.5.0 by Peter Cock
0
by Peter Cock
Error when "Export History to File" by D K
0
by D K
December Galaxy News: New web site, GAMe deadline extended by Dave Clements-2
0
by Dave Clements-2
Galaxy Orione server name by Blaise Pascal Bougno...
2
by Gianmauro Cuccuru
ToolShed devteam tools error by Yip, Miu ki
0
by Yip, Miu ki
Galaxy 16.07: datasets don't update to yellow "running" state with novel job runner by Peter Briggs
0
by Peter Briggs
Datasets incorrectly flagged as deleted by Lance Parsons
5
by Lance Parsons
Unable to upload bam files as links to my local galaxy instance - please help! by Konstantinos Vouteta...
1
by Peter Cock
Jobs don't run for one user by Langhorst, Brad
5
by Nate Coraor (nate@bx...
Pulsar: issue configuring to use shared filesystem rather than staging data by Philip Blood
2
by Philip Blood
Datasets no longer automatically update to yellow "running" state using novel job runner by Peter Briggs
0
by Peter Briggs
htseq_count version 0.6.1p1 dated (2016-09-21) and (2015-07-28) by Raphenya, Amogelang
0
by Raphenya, Amogelang
History is not accessible by user by Maximilian Friedersd...
3
by Hans-Rudolf Hotz
Errno 13 when trying to visualize Bowtie2 data by Federico Miozzo
1
by Nate Coraor (nate@bx...
problem installing a tool by Michael Thon-2
0
by Michael Thon-2
Moving Galaxy Install From One Server To Another by evan clark
5
by Brian Claywell-2
Galaxy ToolShed Installation Question by Yip, Miu ki
1
by Martin Čech
running jobs on Apache Mesos by Matthias De Smet
0
by Matthias De Smet
"Phantom" tool dependencies when installing from toolshed? by Peter Briggs
0
by Peter Briggs
Running unit tests on [dev] by Maximilian Friedersd...
2
by Maximilian Friedersd...
Talk abstracts for Galaxy Australasia Meeting (GAMe 2017) are due 30 Nov by Dave Clements-2
0
by Dave Clements-2
Mapping LDAP groups to Galaxy groups/roles by Ignacio EGUINOA
0
by Ignacio EGUINOA
Error running bedgraph to bigwig on local galaxy by evan clark
2
by evan clark
Is there demand for rate limiting in Galaxy? by Maximilian Friedersd...
3
by Martin Čech
Sharing galaxy defined workflow with link leads to Internal Server Error by NGS & Bioinformatics...
0
by NGS & Bioinformatics...
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