Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Xenopus genome by Kurtenbach, Stefan
1
by Christian Brenninkme...
How to get the encoded ID from the HistoryDatasetAssociation? by Malcolm Tobias
2
by Malcolm Tobias
Any way to prime the value of a tool text field parameter dynamically? by Dooley, Damion
0
by Dooley, Damion
not sure what I can do about this... by fernandez Edgar
22
by fernandez Edgar
How to replace 'BioMart Central server' in the "Get Data" tools ? by Hans-Rudolf Hotz
5
by Martin Čech
Deploying custom genome in Galaxy for use with ANNOVAR by David Kovalic
1
by Peter Briggs
Error installing cummeRbund tool by Raymond Wan
3
by Raymond Wan
Auto-registration and database session issue by Durdevic, Marija
0
by Durdevic, Marija
setting metadata externally failed for HistoryDatasetAssociation by Anthony Underwood
3
by Anthony Underwood
The state of the MOTHUR merge? by Peter van Heusden
2
by Peter van Heusden
Re: LDAP authentication by mark fernandes (IFR)
0
by mark fernandes (IFR)
atlas 3.10 IUC error by Olivier CLAUDE
8
by Ulf
LDAP authentification by Durdevic, Marija
11
by Durdevic, Marija
June Galaxy News: Register for GCC2016 by June 4, new papers, openings, directories, ... by Dave Clements-2
0
by Dave Clements-2
Deeptools installation fails because of missing python module(setuptools) by Tobias Zimmermann
1
by Björn Grüning-3
Intallation of deeptools fails by Tobias Zimmermann
0
by Tobias Zimmermann
GCC2016: Register by this Saturday; Posters & Demos posted by Dave Clements-2
0
by Dave Clements-2
Bug Found: 2 tabs in browser open to different histories confuses tools by ryang
2
by Eric Rasche-2
Problem running bwa-mem by C. Ch.
0
by C. Ch.
SFTP settings by Durdevic, Marija
0
by Durdevic, Marija
PLINK 1.90 wrapper by Jochen
1
by Björn Grüning-3
Error in Deleting datasets by nazeer
0
by nazeer
Problems using LDAP authentification by Fahrenholz, Jan-Niko...
0
by Fahrenholz, Jan-Niko...
Unsorted BAM file --> Galaxy crash? by Raymond Wan
8
by Raymond Wan
Question: How to limit the number of dispatched jobs in Galaxy? by georgeweingart
1
by Dannon Baker-2
setting up a local galaxy instance - need sftp help by Jessica Grant
0
by Jessica Grant
Current history via the REST API (or blend4j) by Keith Suderman
6
by Carl Eberhard
sftp over proftpd and postgresql by Durdevic Marija
0
by Durdevic Marija
wheels.galaxyproject.org by Patrice Dehais
1
by Nicola Soranzo-2
It 's possible to purge deleted datasets with last galaxy code ? by sarah Maman
2
by Nicola Soranzo-2
STACKS error by Raphenya, Amogelang
5
by Ralf Weber
Refresh of screens in Galaxy Docker environment by georgeweingart
6
by By "Nate St. Germain...
galaxy does not get kill signal from drmaa (sge6) by Nick
1
by John Chilton-4
Galaxy Interactive Environments: node 0.10.X - 0.11.X vintage necessary? by Tamir,Ido
1
by Björn Grüning-3
Hits2 2.0.3 missing environment by Nick
0
by Nick
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