Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
iRODS by Mikael Loaec
5
by Mohamed Kassam
Re: Problem uploading multigigabyte files via API by hackdna
0
by hackdna
Problems getting Galaxy AMI running in AWS by Quentin Spencer
0
by Quentin Spencer
Data manager problem by Scott Szakonyi
5
by Will Holtz
UTF8 problem with database "An error occured when getting updates from the server" by juliech
2
by juliech
Galaxy not starting after upgrading to v16.01 by Tiago Macedo
0
by Tiago Macedo
a quick question about picard by Rui Wang
1
by Jennifer Hillman-Jac...
Adding Reference genome of Chicken and Duck in Tophat by Vijay Kumar
1
by Jennifer Hillman-Jac...
Proper Galaxy Installation by Durdevic, Marija
2
by Durdevic, Marija
Error when uploading files (using Pulsar) by Tiziano Flati
2
by Marius van den Beek
Planemo inside of Conda by D K
3
by D K
file format of individual files within collections by emanuele lapponi
0
by emanuele lapponi
Position Vacant - Galaxy and Language Research in Sydney by Steve Cassidy
0
by Steve Cassidy
Parallelism (job splitting) for ncbi_blast_plus running through CloudMan by David Kovalic
7
by David Kovalic
Changing temporary directory for planemo by D K
1
by John Chilton-4
Kallisto tool wrapper? by Lance Parsons
9
by Lance Parsons
May 2016 Galaxy News: GCC2016 DEADLINES Approaching by Dave Clements-2
0
by Dave Clements-2
local toolshed not working by Vincent Cahais
5
by Dave Bouvier
Problem with DRMAA and Pbs Pro by Tiziano Flati
2
by John Chilton-4
Problem uploading multigigabyte files via API by hackdna
0
by hackdna
output datasets by ryang
2
by ryang
PSU Meet and Greet this Saturday by Keith Suderman
2
by Björn Grüning-3
ERROR: PIP is not a legl parament of an Ansible Play by William Ge
20
by William Ge
Main Toolshed Account password reset by Oksana Korol
0
by Oksana Korol
Re: galaxy-dev Digest, Vol 118, Issue 18 by Oksana Korol
0
by Oksana Korol
GalaxyAdmins Meetup THIS THURSDAY: Galaxy on Mobile Devices; and Tools, Tools, Tools! by Hans-Rudolf Hotz-3
2
by Hans-Rudolf Hotz
FTP Authentication Against Postgres Database with PBKDF2 by Joe Greer
0
by Joe Greer
galaxy running problem by V.Freire-Beneitez
1
by Christian Brenninkme...
set_metadata in galaxy_XXX.sh script by Laure QUINTRIC
0
by Laure QUINTRIC
galaxy v16.04 drmaa remote user and local upload by Laure QUINTRIC
0
by Laure QUINTRIC
remote user CAS invalide session by Laure QUINTRIC
3
by Laure QUINTRIC
Question: Cannot start local Galaxy after upgrade to v16.01 by D K
2
by Nicola Soranzo-2
novice galaxy user needs help retrieving MIA history by ryan stueve
1
by Jennifer Hillman-Jac...
Issue with GATK in workflow by Scott Szakonyi
3
by Von Kuster, Greg
Order of element in datasetcollection "List" by juliech
0
by juliech
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