Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
file transference between different galaxy servers... by Danilo Ceschin
2
by Jennifer Hillman-Jac...
Warning: Incorrect datetime value in Galaxy 16.01 by SAPET, Frederic
2
by SAPET, Frederic
Tool Visibility feature by SAPET, Frederic
3
by SAPET, Frederic
If you need to use PBS Pro with Galaxy 16.01. by SAPET, Frederic
0
by SAPET, Frederic
Request help to configure local galaxy in Git by Manonanthini Shanmug...
1
by Martin Čech
Troubleshooting BAM file upload issues by Amelia Ireland
10
by Daniel Blankenberg
package_bowtie_2_2_6 error by Changyu Fan
0
by Changyu Fan
Galaxy CloudMan with Galaxy 16.01 by Enis Afgan-3
0
by Enis Afgan-3
perl version 5.18.1 repository error by Rathert, Philipp, Dr...
5
by Rathert, Philipp, Dr...
Python 2.7 vs 2.6 for galaxy after 16.01 by D K
7
by Sebastian Schaaf
Data set too large by Tiara Smith
1
by Jennifer Hillman-Jac...
automatic adding of a tab in a fastq header by Fabien Mareuil
9
by Fabien Mareuil
Numpy 1.9 installation errors by Dewell, Scott
0
by Dewell, Scott
GCC2016 Oral Presentation Abstracts due this Friday, March 25 by Dave Clements-2
0
by Dave Clements-2
"Edit settings" button in Trackster is no longer working (15.10) by Hans-Rudolf Hotz
3
by Hans-Rudolf Hotz
shed_tool_conf.xml by Rathert, Philipp, Dr...
5
by Hans-Rudolf Hotz
mirDeep2 install error by Jochen
4
by Jochen
Error filtering sam files by jvdelarosa
0
by jvdelarosa
per-tool job resource defaults by Stephan Oepen
4
by John Chilton-4
Problem with tool dependency by Mikael Loaec
0
by Mikael Loaec
planemo update failing on testtoolshed by Peter van Heusden
2
by Peter van Heusden
removing tool from toolshed by Xianrong Wong
1
by Von Kuster, Greg
Cloudman & AWS IAM_PROFILE support? by ryang
6
by Enis Afgan-3
Test tool shed api - repositories.get_ordered_installable_revisions() not working? by Simon Gladman-2
2
by Martin Čech
Please help fix toolshed repository: trtr by Lance Parsons
3
by Martin Čech
Re: Scaling tools: data available? (Peter van Heusden) by Dooley, Damion
1
by Peter van Heusden
Announcement: Galaxy DevOps Workshop by Björn Grüning-3
0
by Björn Grüning-3
Using forms to collect user info at registration by Peter Briggs
2
by Peter Briggs
Galaxy drops my tenth xml tool parameter by ROBERT BROWN
0
by ROBERT BROWN
Setting job_working_directory on per-tool basis? (cuffdiff/cummerbund SQLite db error) by Peter Briggs
2
by John Chilton-4
Help with dynamic job destination by Lance Parsons
0
by Lance Parsons
Job stuck in running state. by Zuzanna K. Filutowsk...
1
by John Chilton-4
Trackster in 16.01 broken by Lubos Klucar
5
by Lubos Klucar
Problems uploading files to galaxy by Lemley, Rob
5
by Lemley, Rob
Galaxy tools for docking protein-compounds. by Léo Biscassi
19
by Björn Grüning-3
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