Galaxy Development List Archive

This forum is an archive for the mailing list galaxy-dev@lists.galaxyproject.org
Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8933)
Replies Last Post Views
[hg] galaxy 1688: Added a new option to the grouping tool to fac... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1687: megablast fix from Anton by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Storing/Peeking/Downloading compressed files by Assaf Gordon
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by Assaf Gordon
Downloading entire history as tar.gz archive by Assaf Gordon
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by Assaf Gordon
[hg] galaxy 1686: Since tempfiles seem to occasionally be left b... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1685: Script to enumerate GOPS JOIN jobs that could ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1684: Modified sort options in grouping tool to work... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1683: fix for short read score distribution tool. re... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1682: fixed for short read build distribution tool. ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1681: Yet another fix for the deleted histories report. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1680: Fix for deleted histories report in the system... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1679: Add security to reports app, fixes reports. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1678: Enhance the tool panel, now supports following... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1677: Pass in a session cookie name when building th... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1676: speed enhancement for incorrect_gops_jobs script. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1675: Fix for a minor bug in my previous commit. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1674: Enhancing incorrect_Gops_job script to output ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1673: Allow workflows to recognize "data_meta" filte... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1672: Update bx-python to r459 by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1671: Server errors thrown when switching between Ga... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1670: Some code cleanup in framework/__init__.py by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1665: merging heads by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1669: Fix for the users reports. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1668: Rename gbrowse_elegans to wormbase_test, add a... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1667: Reset functional test port which somehow got c... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1666: Attempting to merge conflicts. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1664: Add ability for data_source tools to append pa... by Greg Von Kuster
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by Greg Von Kuster
what is the status of GALAXY integration with GBrowse? by David M. Goodstein
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by Greg Von Kuster-2
[hg] galaxy 1663: Fix for showing deleted datasets in a history, ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1662: Added more test-cases to GOPS JOIN to include ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1661: Bug fix for users report controller, some user... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1660: Update bx-python to r458 by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1658: Update Fasta.sniff() by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1659: New report showing last login for users, a few... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1657: Comment out logging for remote_user creation a... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
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