Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8979)
Replies Last Post Views
[hg] galaxy 1698: Fix for data source tools that were broken due... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1696: Make the PBS script/stdout/stderr directory co... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1697: galaxy.config.resolve_path is not absolute... by Greg Von Kuster
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by Greg Von Kuster
Showing dataset state in History List View by Assaf Gordon
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by Von Kuster, Greg
[hg] galaxy 1695: Add an option to override the output dataset(s... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1694: Allow upstream proxy to set wsgi.url_scheme, s... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1693: Fix from James Casbon for a problem he has exp... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1692: Fix for my last commit. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1691: Add support for NCBI Blast XML data format. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1689: Better exception handling, messaging for uploa... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1690: log exceptions when removing temporary files w... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1688: Added a new option to the grouping tool to fac... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1687: megablast fix from Anton by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Storing/Peeking/Downloading compressed files by Assaf Gordon
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by Assaf Gordon
Downloading entire history as tar.gz archive by Assaf Gordon
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by Assaf Gordon
[hg] galaxy 1686: Since tempfiles seem to occasionally be left b... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1685: Script to enumerate GOPS JOIN jobs that could ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1684: Modified sort options in grouping tool to work... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1683: fix for short read score distribution tool. re... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1682: fixed for short read build distribution tool. ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1681: Yet another fix for the deleted histories report. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1680: Fix for deleted histories report in the system... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1679: Add security to reports app, fixes reports. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1678: Enhance the tool panel, now supports following... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1677: Pass in a session cookie name when building th... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1676: speed enhancement for incorrect_gops_jobs script. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1675: Fix for a minor bug in my previous commit. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1674: Enhancing incorrect_Gops_job script to output ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1673: Allow workflows to recognize "data_meta" filte... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1672: Update bx-python to r459 by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1671: Server errors thrown when switching between Ga... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1670: Some code cleanup in framework/__init__.py by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1665: merging heads by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1669: Fix for the users reports. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1668: Rename gbrowse_elegans to wormbase_test, add a... by Greg Von Kuster
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by Greg Von Kuster
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