Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9006)
Replies Last Post Views
[hg] galaxy 1720: in JobWrapper.fail(), save the traceback befor... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1719: Fix an infinite loop in eggs.require() by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1718: Changed grouping output to tabular by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1717: Update welcome page with Anton's copy from sec... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1716: Fixes in the upload tool for removing temporar... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1715: Fixes for formatting end of line chars in html... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1714: Fixes for Biomart and UCSC to better ensure th... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1713: remove the usage of hast tables in the fasta-t... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1711: Removed an option from grouping tool, which is... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1712: Flush newly created users directly in __get_or... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1710: Eliminate the use of the "order=" for the snif... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
New report page - disk usage over time by Assaf Gordon
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by Assaf Gordon
New report page - disk usage by file-size by Assaf Gordon
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by Assaf Gordon
New report page - find Datasets by ID by Assaf Gordon
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by Assaf Gordon
[hg] galaxy 1709: More changes to mutability tool. by gua110
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by gua110
Adding the 'name' content of the selection parameter by Assaf Gordon
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by Von Kuster, Greg
request: add newlines to dataset's info field by Assaf Gordon
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by Von Kuster, Greg
[hg] galaxy 1708: Change History.copy() back to use datasets rat... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1706: Add a SelectToolParameterWrapper object and a ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1707: Fixed a bug in microsatellite mutability tool. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1705: When copying a history, only copy active_datas... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1704: Improvements to job recovery and clarification... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1703: Move setting of the working directory to the w... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1702: Set the working directory in the wrapper when ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1701: Tool to find the least common ancestor added u... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1700: Eliminate boilerplate code to track memory_usa... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1699: Add new tool config for flymine production ser... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1698: Fix for data source tools that were broken due... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1696: Make the PBS script/stdout/stderr directory co... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1697: galaxy.config.resolve_path is not absolute... by Greg Von Kuster
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by Greg Von Kuster
Showing dataset state in History List View by Assaf Gordon
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by Von Kuster, Greg
[hg] galaxy 1695: Add an option to override the output dataset(s... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1694: Allow upstream proxy to set wsgi.url_scheme, s... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1693: Fix from James Casbon for a problem he has exp... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1692: Fix for my last commit. by Greg Von Kuster
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by Greg Von Kuster
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