Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9066)
Replies Last Post Views
[hg] galaxy 1740: Fixes for wormbase tools, use post as http met... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1739: Integrating i18n support provided by Mitsuteru... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1738: Modified help for \"get Indels\" tool, and mad... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1737: Adding a tiny fix to scatter plot tool. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1736: Quick fix for Wiggle.set_meta(). No longer sca... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1735: Fix for displaying a history's activatable dat... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1734: Have DataMetaFilter in dynamic_options.py retu... by Greg Von Kuster
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by Greg Von Kuster
[svn] [2778] Typo by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[svn] [2777] Make taxonomy tools compile without changing the source by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Project structure by Ayton Meintjes
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by James Taylor-3
[hg] galaxy 1733: Fixes to get functional tests working. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1732: Removed lzo requirement from two tools- getInd... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1731: Stop jobs if any of their output datasets grow... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1730: Handle exceptions when building the app (witho... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1729: Corrected a bug in branch lengths batchfile, a... by Greg Von Kuster
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by Greg Von Kuster
Heatmap plotting tool by Assaf Gordon
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by Assaf Gordon
[hg] galaxy 1728: Fix annotation profiler interpreter to be pyth... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1727: Add fetch_eggs option to pull for other platfo... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1726: More fixes to eggs.require() by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1725: Adding modified hyphy functional test output f... by gua110
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by gua110
[hg] galaxy 1724: upgrade bx-python to rev 460 by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1723: Fix For MAF Filter tool. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1722: Add a make_dict_copy method to Tool.execute so... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1721: Apparently I only committed these fixes to sec... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Alignment Extractors - in batch? by Abhi Ratnakumar
2
by Jim Kent
[hg] galaxy 1720: in JobWrapper.fail(), save the traceback befor... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1719: Fix an infinite loop in eggs.require() by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1718: Changed grouping output to tabular by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1717: Update welcome page with Anton's copy from sec... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1716: Fixes in the upload tool for removing temporar... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1715: Fixes for formatting end of line chars in html... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1714: Fixes for Biomart and UCSC to better ensure th... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1713: remove the usage of hast tables in the fasta-t... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1711: Removed an option from grouping tool, which is... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1712: Flush newly created users directly in __get_or... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
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