Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9006)
Replies Last Post Views
[hg] galaxy 1658: Update Fasta.sniff() by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1659: New report showing last login for users, a few... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1657: Comment out logging for remote_user creation a... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1656: Fix a development problem that I inadvertently... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1655: Bug fix for last commit to Tabular.set_meta() by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1654: Update Tabular.set_meta() to use column types ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1652: Forgot to change the test data for the gsummar... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1653: Updating gsummary functional test output file, ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1651: Increase the version in the grouping tool due ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1650: Update GMAJ help. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1649: Fix a couple outdated download urls by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1647: allow users to specify that label for input da... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1648: Let UCSC through w/o authentication when use_r... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1646: imported patch job-eager-load by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1645: imported patch job-queue-sessions by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1644: Bug fixes for compare, Group and filter tools. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1643: Call set_size() before set_peek() on datasets, ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1640: Fixes, code cleanup in cleanup_datasets.py. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1642: Refix cleanup_dataset.py script. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1641: Improve template for error reporting from users. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1639: Fix for setting metadata on a history item des... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1638: Update GMAJ to latest beta. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1637: Fix job recovery by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Galaxy question by Fu, Yi-Ping
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by Fu, Yi-Ping
[hg] galaxy 1635: Always write keys in order when creating json ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1636: bugfix to last commit by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1634: (no commit message) by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1633: update poisson test tool for R warnings. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1632: Some job runner fixes. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1631: Missed translating the primaryTable data type ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1630: Add a new <data_type_translation> tag set to d... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1629: Fix a bug I missed in my last commit. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1628: Fixes for the incorrect_gops_jobs script. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1627: Fixed an indentation bug in incorrect_gops_job... by gua110
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by gua110
[hg] galaxy 1626: Change state to running before thread handoff. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
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