Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8982)
Replies Last Post Views
[hg] galaxy 1635: Always write keys in order when creating json ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1636: bugfix to last commit by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1634: (no commit message) by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1633: update poisson test tool for R warnings. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1632: Some job runner fixes. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1631: Missed translating the primaryTable data type ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1630: Add a new <data_type_translation> tag set to d... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1629: Fix a bug I missed in my last commit. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1628: Fixes for the incorrect_gops_jobs script. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1627: Fixed an indentation bug in incorrect_gops_job... by gua110
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by gua110
[hg] galaxy 1626: Change state to running before thread handoff. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1624: Script to fetch gops jobs that might have prod... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1625: small modification to incorrect_gops_jobs scri... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1623: Whoops, forgot to fix changed config param in ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1621: Add a thread pool for the PBS runner to use fo... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1622: Start the job queue after the utils. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Tool with several outputs -- in a directory? by Sebastian J. Schulth...
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by Sebastian J. Schulth...
[hg] galaxy 1620: Add the "upload" job state to prevent job runn... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1619: Fixes for jobs reports. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1618: Automated merge with ssh://scofield.bx.psu.edu... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1617: imported patch workflow-bugfix-10Nov2008 by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1616: Fix for purging dataset - add check for pre-hi... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1615: Add functioal test baseline support for the re... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1614: A bug in recent job runner changes... nothing ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1613: Add a test for the sample analysis of retrievi... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1612: Fixes for testing framework to allow it to be ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1611: Create a job_to_output_dataset for the upload ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1610: Monitor memory usage in the JobWrapper. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1609: A better test to ensure that a MetadataCollect... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1608: Possible fix for the infinite metadata recursi... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1607: Fix jobs report to display jobs in deleted and... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1606: Make logging events a config setting. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1605: Add ability to track memory usage in code secm... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1604: Fix get_bool in config by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1602: Upload tool will now create a job record, no j... by Greg Von Kuster
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by Greg Von Kuster
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