Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8957)
Replies Last Post Views
[hg] galaxy 1577: Improve job error messaging, some fixes for se... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1576: Add a memdump page to the admin controller, ma... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1575: Add a new URL_method attribute to data_source ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1573: Add some missing 'url_for's. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1574: WebHelpers imports simplejson. Import simplej... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1572: Fix a bug from the last commit, what I changed... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1571: When creating display links, use url_for to ad... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1568: Add a new metadata type of Metadata Files. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1570: Record a useful info message when a job fails ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1569: Fix for mapping unit test. Testing of metadat... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1567: Like the local runner, if job preparation fail... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1565: Fix for fix for unit tests. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1566: Add the guppy egg by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1564: Add a Heapy-based memdump module. Send the Ga... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1563: Fix for unit test for DataTool Parameter by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1562: Fix for implicit conversion checking on multip... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1561: Fix the use_heartbeat check in config.py by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1560: Fix for optional datasets to work with metadat... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1559: Added Validator to a bunch of tools.. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1558: Fixes for data_source tools, data.name, data.i... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1557: Refactor internals of metadata. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1556: update xml files for short reads mapping tools. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1554: add shrimp_color_space mapping tool with funct... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1555: Updating test-output for Extract Orthologous m... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1553: Fix for data_source tool params sent in the po... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1552: Maf stats will now use bitset instead of numpy... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1550: Use only 1 underlying executable ( data_source... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1551: Add ability to undelete histories. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1549: Users can copy datasets between their histories. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1548: Treat EpiGRAPH as a data source much like ucsc... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1547: Improve ajax deleting refreshing of dataset co... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[svn] [2774] Changed a couple constants in sputnik, as per Guru. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Re: galaxy-dev Digest, Vol 33, Issue 21 by Ross-2
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by Praveen Agrawal
[hg] galaxy 1546: Updating "regional variation' section in tool_... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1545: Modified help message for indel rate tool. by Greg Von Kuster
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by Greg Von Kuster
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