Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9000)
Replies Last Post Views
[hg] galaxy 1620: Add the "upload" job state to prevent job runn... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1619: Fixes for jobs reports. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1618: Automated merge with ssh://scofield.bx.psu.edu... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1617: imported patch workflow-bugfix-10Nov2008 by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1616: Fix for purging dataset - add check for pre-hi... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1615: Add functioal test baseline support for the re... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1614: A bug in recent job runner changes... nothing ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1613: Add a test for the sample analysis of retrievi... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1612: Fixes for testing framework to allow it to be ... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1611: Create a job_to_output_dataset for the upload ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1610: Monitor memory usage in the JobWrapper. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1609: A better test to ensure that a MetadataCollect... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1608: Possible fix for the infinite metadata recursi... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1607: Fix jobs report to display jobs in deleted and... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1606: Make logging events a config setting. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1605: Add ability to track memory usage in code secm... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1604: Fix get_bool in config by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1602: Upload tool will now create a job record, no j... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1603: Fixes for upload tool job creation. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1601: Apply James' faster_random patch from Nov 1. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1600: Integrate "session_create_speed" and "faster_r... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1599: A fix for the metadata reverting issue seen wi... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1597: Backed out changeset 36a297157114 by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1598: Fix a bug: errored jobs weren't actually being... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1596: A fix for the metadata reverting issue seen wi... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1592: Fixes for dealing with UnvalidatedValues (i.e.... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1595: Fix History.add_dataset() to be compatible wit... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1594: Fix for use of deprecated <display> tags in to... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1593: Small typo in one of the encode import tools. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1591: James' changes allowing the server to run w/o ... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1590: Convert tool_form/tool_executed to mako (for p... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1589: Migrate central repo to alchemy 4. by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1588: Use LD_RUN_PATH when building pbs_python by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1587: Added new functional tests to all gops tools u... by Greg Von Kuster
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by Greg Von Kuster
[hg] galaxy 1586: Annotation profiler: Better handling of the ca... by Greg Von Kuster
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by Greg Von Kuster
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