Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9000)
Replies Last Post Views
[hg] galaxy 1520: Fix a bug in shrimp_wrapper and add a tool for... by greg
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by greg
[hg] galaxy 1519: Update GMAJ tool interface. by greg
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by greg
[hg] galaxy 1518: Add a wrapper for metadata inside of DatasetFi... by greg
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by greg
[hg] galaxy 1517: update shrimp_wrapper. by greg
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by greg
[hg] galaxy 1516: Update to latest gmaj. by greg
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by greg
[hg] galaxy 1514: New tool to format short read mapping data as ... by greg
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by greg
[hg] galaxy 1515: Forgot to update tool_conf.sample with the new... by greg
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by greg
[hg] galaxy 1513: Quick 'n easy solution to the EMBOSS stage in/... by greg
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by greg
[hg] galaxy 1512: The MetadataCollection object is now created o... by greg
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by greg
[hg] galaxy 1511: Merge local heads by greg
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by greg
[hg] galaxy 1510: Strip whitespace from columns in file for data... by greg
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by greg
[hg] galaxy 1508: Small update for maf stats tool. by greg
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by greg
[hg] galaxy 1509: Rewrote "Compare two queries" tool in Python. by greg
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by greg
[hg] galaxy 1507: add SHRiMP mapper for short reads analysis. by greg
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by greg
[hg] galaxy 1506: Forgot two test datasets by greg
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by greg
[hg] galaxy 1505: Update MAF stitcher to be more efficient. Requ... by greg
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by greg
[hg] galaxy 1504: Typos by greg
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by greg
dynamic_options by Ross-2
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by Ross-2
[hg] galaxy 1503: Lastz with additional short read changes by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1502: Prevent workflow editor form loading in IE6 an... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1501: Upgrade bx-python to r448. by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1500: Allow complete logging configuration to be spe... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1499: Update GMAJ tool to allow the specifying of an... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1498: Fix for grouping.py: New line character append... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1496: The interval to BED converter will now use the... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
[hg] galaxy 1497: Fix for scatterplot.py: Handling an uncaught e... by Nate Coraor (nate@bx...
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by Nate Coraor (nate@bx...
Main is at rev 1495:49fe600b9499 by Von Kuster, Greg
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by Von Kuster, Greg
[hg] galaxy 1495: Update packed version of workflow editor scrip... by greg
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by greg
[hg] galaxy 1494: Fix functional test for count tool and correct... by greg
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by greg
[hg] galaxy 1493: More fixes for twill 0.9, the annotation profi... by greg
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by greg
[hg] galaxy 1492: Fix for save link of history items. by greg
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by greg
[hg] galaxy 1491: Fix for GMAJ tool when species chromosomes are... by greg
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by greg
Adding new interval datatype by Assaf Gordon
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by Assaf Gordon
Test is at rev 1553:5468a480c0d8 by Von Kuster, Greg
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by Von Kuster, Greg
Test is at rev 1552:3af945fa486b by Von Kuster, Greg
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by Von Kuster, Greg
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