Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9232)
Replies Last Post Views
Galaxy/Tool Shed Security Vulnerability - Read/write arbitrary filesystem paths by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Error in plot phylogenetic tree by Fan, Xiaozhou
0
by Fan, Xiaozhou
Custom tool with multiple inputs for different datasets. How to preferrentially select by ryang
1
by Björn Grüning-3
Restricting tool input to 1 dataset instead of multiple by ryang
1
by Björn Grüning-3
cleanup by Rathert, Philipp, Dr...
5
by Rathert, Philipp, Dr...
Galaxy 16.01, eggs vs wheels, and running jobs as the user by Peter Cock
3
by Nate Coraor (nate@bx...
Docker and issue with shed_tool_conf.xml by Rathert, Philipp, Dr...
0
by Rathert, Philipp, Dr...
Plans for workflow & parallelisation work? by Peter van Heusden
2
by John Chilton-4
It would be nice to know that labels can only be lowercase in format tags by ROBERT BROWN
1
by ryang
Bypassing Data Managers? by Raymond Wan
7
by Raymond Wan
18 February GalaxyAdmins Meetup: Ansible, Python Wheels by Hans-Rudolf Hotz
3
by Dave Clements-2
GCC2016 Registration & Lodging Scholarships by Dave Clements-2
0
by Dave Clements-2
copy/import shared history by leshin
5
by leshin
Fwd: [GMOD-devel] Google Summer of Code - Open Genome Informatics group by Dave Clements-2
0
by Dave Clements-2
Error sorting tophat accepted hits BAM file by name by Raphenya, Amogelang
0
by Raphenya, Amogelang
stage_data_in_history ValueError: No JSON object could be decoded by Peter Cock
0
by Peter Cock
Gemini installation error by Sebastian Schaaf
3
by Björn Grüning-3
NGS.plot script freeze by Rathert, Philipp, Dr...
2
by Rathert, Philipp, Dr...
REGISTRATION OF GALAXY by martin perez
2
by Martin Čech
bx-python issue with intersect and subtract tools by richjp
1
by Martin Čech
Jupyter by Jasper Jan Koehorst
3
by Björn Grüning-3
A Report Calc tool which provides a scripting language and interpreter for text mining and quality control by Dooley, Damion
4
by Dooley, Damion
EMBOSS 6.6.0 + NCBI-BLAST+ integration by Floreline TOUCHARD
8
by Peter Cock
Galaxy broken after update to 16.01 by Matthias De Smet
1
by Peter van Heusden
Bioinformaticist @ Johns Hopkins Advanced Physics Laboratory (APL) by Dave Clements-2
0
by Dave Clements-2
Rscript run under Tools Directory cannot see Datafile in History by ROBERT BROWN
7
by Gildas Le Corguillé
Removing set_metadata_externally from wiki documentation? by Peter Cock
2
by Rémy Dernat
dramm.py error by leshin
2
by leshin
Upload issue in local installation by bdevkota
7
by Rémy Dernat
Error while trying to bootstrap the toolshed by anmoljh
0
by anmoljh
planemo reports test failure when test succeeds by Peter van Heusden
2
by Peter van Heusden
Trimmomatic doesn't recognise pair collection by Peter van Heusden
3
by Peter Briggs
Galaxy sending jobs to multiple clusters by vazovn
9
by vazovn
February 2016 Galaxy News: GCC2016 Registration and Abstract Submission are Open by Dave Clements-2
0
by Dave Clements-2
REST API - Tool input information by Jasper Jan Koehorst-...
1
by John Chilton-4
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