Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
access system variables in tool xml by Matthias De Smet
0
by Matthias De Smet
Importing workflows via command-line/Docker script by Cameron Jack
4
by Björn Grüning-3
galaxy job manager with celery and rabbitmq by 杜云飞
1
by Peter van Heusden
Python on cluster for setting metadata after jobs complete by Peter Cock
4
by Peter Cock
Want to Contribute in galaxy project by Manish Bisht
1
by Martin Čech
Creating cluster_files_directory (default database/pbs) by Peter Cock
2
by Peter Cock
Re: errors installing tool dependencies... by fernandez Edgar
10
by Martin Čech
Question about FastqMcf installed from the Galaxy toolshed by audrey michel
0
by audrey michel
configuration management, tool shed and tool revisions by smcmahon67
2
by smcmahon67
Adding a5_pipeline.pl to galaxy by Raphenya, Amogelang
2
by Raphenya, Amogelang
Rocks cluster; jobs run but Galaxy can't find jobid when submitted via drmaa by Eric Shell
4
by Rémy Dernat
Data Collection collection_type list:list by anmoljh
1
by John Chilton-4
Ansible roles: galaxy_server_dir vs galaxy_home_dir and galaxy_root by Peter van Heusden
2
by Peter van Heusden
Sample tracking / external services - still supported? by Matthias De Smet
2
by Langhorst, Brad
Re: CEAS error - solved by Rathert, Philipp, Dr...
1
by Peter Briggs
tool development by Matthias De Smet
2
by Matthias De Smet
python_mysqldb caused zip_safe flag not set by Mic
1
by Peter Briggs
CEAS error by Rathert, Philipp, Dr...
1
by Peter Briggs
Error in matplotlib by Shane Kelly
0
by Shane Kelly
package dependencies by Langhorst, Brad
3
by Björn Grüning-3
Bowtie2 by Laforest, Martin
3
by Björn Grüning-3
Graceful restart with uWSGI/Supervisor by Anthony Bretaudeau-2
0
by Anthony Bretaudeau-2
tools to reduce list of datasets. by Christian Brenninkme...
1
by Christian Brenninkme...
Please terminate iGeneMap cluster by Laura Song
1
by Dannon Baker-2
Login reguried causing nested main page loading by Christian Brenninkme...
2
by Carl Eberhard
Job metrics configuration by Peter van Heusden
2
by Peter van Heusden
running in job_working_directory by Jorrit Boekel
1
by Jorrit Boekel
Some workflows not scheduled until handler restart by Jelle Scholtalbers
2
by John Chilton-4
Extract features : error loading field data in usegalaxy by Gildas Le Corguillé
1
by Gildas Le Corguillé
Interactive Environment on a VM by Mic
1
by John Chilton-4
Apache proxy and sub-directory setting of local galaxy by XiaoTao Jiang
0
by XiaoTao Jiang
logged in as 'user2' externally, but has a cookie as 'user1' invalidating session by Floreline TOUCHARD
0
by Floreline TOUCHARD
RFC: new <action type="download_by_proxy"> by Björn Grüning-3
4
by Björn Grüning-3
January 2016 Galactic News by Dave Clements-2
0
by Dave Clements-2
security: brute force login by Raphenya, Amogelang
3
by Eric Rasche-2
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