Galaxy Jobs Waiting to Run for Several Days

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Galaxy Jobs Waiting to Run for Several Days

Elnagheeb, Marwa
Hello,

I am a student, and I am using the psu galaxy server for an assignment. My workflow for each of my 5 data sets has been waiting to run 3 jobs (bwa alignment, sam to bam, and bam statistics). One of my datasets reached completion two days ago, but it has been  5 days for the others. Several others in my class have had the same issue. Is there something going on with the server this week? I really need to meet a deadline. Any chance I can get my jobs to run quicker without cloud?

Thanks,
Marwa

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Re: Galaxy Jobs Waiting to Run for Several Days

Jennifer Jackson
Hello,

The public Main Galaxy server has been very busy this last week. Hopefully most if not all of your work has completed by now, but if not, the best strategy is to leave jobs running and not to stop/restart them.

If certain work is more urgent that others, run those first. Jobs are executed in the order that they are submitted.

Take care,
Jen
Galaxy team

On 4/30/13 5:35 AM, Elnagheeb, Marwa wrote:
Hello,

I am a student, and I am using the psu galaxy server for an assignment. My workflow for each of my 5 data sets has been waiting to run 3 jobs (bwa alignment, sam to bam, and bam statistics). One of my datasets reached completion two days ago, but it has been  5 days for the others. Several others in my class have had the same issue. Is there something going on with the server this week? I really need to meet a deadline. Any chance I can get my jobs to run quicker without cloud?

Thanks,
Marwa


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

-- 
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org