Galaxy Url for Fasta and Bed index files

classic Classic list List threaded Threaded
1 message Options
| Threaded
Open this post in threaded view
|

Galaxy Url for Fasta and Bed index files

Asma Riyaz

Hello,

What is an appropriate galaxy URL to use to obtain bed and fasta index files? I have tried below:

myGalaxy.org:port/dataset/get_metadata_file?hda_id=[fasta_dataset_id]&metadata_name=fasta.fai {for fasta index}

and 

myGalaxy.org:port/dataset/get_metadata_file?hda_id=[bed_dataset_id]&metadata_name=bed.idx {for bed index}

While looking through metadata for both bed and fasta file at:

myGalaxy.org:port/api/histories/[history_id]/contents/[api_id]

I realized that it lacks a meta_files list. Is there a way to populate this list for bed and fasta files as well? 

Example: For bam files this list populates as bam_index and hence I use metadata_name=bam_index and an appropriate bai file downloads.

Thank you

Asma


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/