Galaxy error

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Galaxy error

Beck, Emily A

Hello,

I have repeatedly gotten the following error message when attempting to use both the mapping and pileup functions in Galaxy.  I am using files that I have previously used successfully with these functions, and cannot fix it.

Thank you.

~Emily Beck


user
username emilybeck
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total_disk_usage 52086193970
nice_total_disk_usage 48.5 GB
email [hidden email]
is_admin false
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source HDACollection(f313d1d65c4ee57e,451)
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responseText {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0}
responseJSON
err_msg Uncaught exception in exposed API method:
err_code 0
status 500
statusText Internal Server Error
responseHeaders
Server nginx/1.4.7
Date Wed, 16 Jul 2014 15:19:52 GMT
Content-Type application/json
Transfer-Encoding chunked
Connection keep-alive
Cache-Control max-age=0,no-cache,no-store
options
data
parse true
emulateHTTP false
emulateJSON false


Emily Beck
PhD Candidate
Llopart Lab
469 Biology Building
Iowa City, IA 52242
Lab: (319)335-3430


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Galaxy error

John Chilton-4
Hello,

Thanks for the bug report. Is this on the main public server (usegalaxy.org) or a local instance at the University of Iowa?

-John


On Wed, Jul 16, 2014 at 10:39 AM, Beck, Emily A <[hidden email]> wrote:

Hello,

I have repeatedly gotten the following error message when attempting to use both the mapping and pileup functions in Galaxy.  I am using files that I have previously used successfully with these functions, and cannot fix it.

Thank you.

~Emily Beck


user
username emilybeck
quota_percent 19
total_disk_usage 52086193970
nice_total_disk_usage 48.5 GB
email [hidden email]
is_admin false
tags_used
model_class User
id 03f0554e2314759e
source HDACollection(f313d1d65c4ee57e,451)
xhr
readyState 4
responseText {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0}
responseJSON
err_msg Uncaught exception in exposed API method:
err_code 0
status 500
statusText Internal Server Error
responseHeaders
Server nginx/1.4.7
Date Wed, 16 Jul 2014 15:19:52 GMT
Content-Type application/json
Transfer-Encoding chunked
Connection keep-alive
Cache-Control max-age=0,no-cache,no-store
options
data
parse true
emulateHTTP false
emulateJSON false


Emily Beck
PhD Candidate
Llopart Lab
469 Biology Building
Iowa City, IA 52242
Lab: (319)335-3430


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Galaxy error

John Chilton-4
Hello,
 
  Sorry for the delay - please keep all correspondences on galaxy-dev to maximize the likelihood someone will respond and respond promptly. I do not know what would cause this error - does anyone else have any ideas?

-John


On Mon, Aug 4, 2014 at 2:07 PM, Beck, Emily A <[hidden email]> wrote:
Sorry for my delayed response.  The error is on the main public server, and happens when I try to map with Bowtie for Illumina.  Thank you.

~Emily



Emily Beck
PhD Candidate
Llopart Lab
469 Biology Building
Iowa City, IA 52242
Lab: (319)335-3430


From: John Chilton [[hidden email]]
Sent: Tuesday, July 22, 2014 4:06 PM
To: Beck, Emily A
Cc: [hidden email]
Subject: Re: [galaxy-dev] Galaxy error

Hello,

Thanks for the bug report. Is this on the main public server (usegalaxy.org) or a local instance at the University of Iowa?

-John


On Wed, Jul 16, 2014 at 10:39 AM, Beck, Emily A <[hidden email]> wrote:

Hello,

I have repeatedly gotten the following error message when attempting to use both the mapping and pileup functions in Galaxy.  I am using files that I have previously used successfully with these functions, and cannot fix it.

Thank you.

~Emily Beck


user
username emilybeck
quota_percent 19
total_disk_usage 52086193970
nice_total_disk_usage 48.5 GB
email [hidden email]
is_admin false
tags_used
model_class User
id 03f0554e2314759e
source HDACollection(f313d1d65c4ee57e,451)
xhr
readyState 4
responseText {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0}
responseJSON
err_msg Uncaught exception in exposed API method:
err_code 0
status 500
statusText Internal Server Error
responseHeaders
Server nginx/1.4.7
Date Wed, 16 Jul 2014 15:19:52 GMT
Content-Type application/json
Transfer-Encoding chunked
Connection keep-alive
Cache-Control max-age=0,no-cache,no-store
options
data
parse true
emulateHTTP false
emulateJSON false


Emily Beck
PhD Candidate
Llopart Lab
469 Biology Building
Iowa City, IA 52242
Lab: (319)335-3430


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Galaxy error

Nate Coraor (nate@bx.psu.edu)
Hi Emily,

We might be able to track this down on our side if you provide the URL and HTTP method that caused this error and the time it occurred at.

Thanks,
--nate

On Aug 11, 2014, at 9:20 AM, John Chilton <[hidden email]> wrote:

Hello,
 
  Sorry for the delay - please keep all correspondences on galaxy-dev to maximize the likelihood someone will respond and respond promptly. I do not know what would cause this error - does anyone else have any ideas?

-John


On Mon, Aug 4, 2014 at 2:07 PM, Beck, Emily A <[hidden email]> wrote:
Sorry for my delayed response.  The error is on the main public server, and happens when I try to map with Bowtie for Illumina.  Thank you.

~Emily



Emily Beck
PhD Candidate
Llopart Lab
469 Biology Building
Iowa City, IA 52242
Lab: (319)335-3430


From: John Chilton [[hidden email]]
Sent: Tuesday, July 22, 2014 4:06 PM
To: Beck, Emily A
Cc: [hidden email]
Subject: Re: [galaxy-dev] Galaxy error

Hello,

Thanks for the bug report. Is this on the main public server (usegalaxy.org) or a local instance at the University of Iowa?

-John


On Wed, Jul 16, 2014 at 10:39 AM, Beck, Emily A <[hidden email]> wrote:

Hello,

I have repeatedly gotten the following error message when attempting to use both the mapping and pileup functions in Galaxy.  I am using files that I have previously used successfully with these functions, and cannot fix it.

Thank you.

~Emily Beck


user
username emilybeck
quota_percent 19
total_disk_usage 52086193970
nice_total_disk_usage 48.5 GB
email [hidden email]
is_admin false
tags_used
model_class User
id 03f0554e2314759e
source HDACollection(f313d1d65c4ee57e,451)
xhr
readyState 4
responseText {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0}
responseJSON
err_msg Uncaught exception in exposed API method:
err_code 0
status 500
statusText Internal Server Error
responseHeaders
Server nginx/1.4.7
Date Wed, 16 Jul 2014 15:19:52 GMT
Content-Type application/json
Transfer-Encoding chunked
Connection keep-alive
Cache-Control max-age=0,no-cache,no-store
options
data
parse true
emulateHTTP false
emulateJSON false


Emily Beck
PhD Candidate
Llopart Lab
469 Biology Building
Iowa City, IA 52242
Lab: (319)335-3430


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/