Galaxy slurm error

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Galaxy slurm error

evan clark
Has anyone ever encountered an error such as this when running galaxy
with slurm and submitting files for upload and unzip.

slurmstepd: get_exit_code task 0 died by signal

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Re: Galaxy slurm error

Nate Coraor (nate@bx.psu.edu)
Hi Evan,

Are there any other details logged for this job?

--nate

On Thu, Jun 15, 2017 at 9:20 AM, evan clark <[hidden email]> wrote:
Has anyone ever encountered an error such as this when running galaxy with slurm and submitting files for upload and unzip.

slurmstepd: get_exit_code task 0 died by signal

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Re: Galaxy slurm error

David Hoover
I would guess something about the slurm job exceeded some allocated resource (memory, cpu, time) and slurm killed the job.

David Hoover
HPC @ NIH

On Jun 15, 2017, at 11:28 AM, Nate Coraor <[hidden email]> wrote:

Hi Evan,

Are there any other details logged for this job?

--nate

On Thu, Jun 15, 2017 at 9:20 AM, evan clark <[hidden email]> wrote:
Has anyone ever encountered an error such as this when running galaxy with slurm and submitting files for upload and unzip.

slurmstepd: get_exit_code task 0 died by signal

___________________________________________________________
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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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Re: Galaxy slurm error

Nate Coraor (nate@bx.psu.edu)
If slurm accounting is configured, `sacct` might reveal more. You might also check the slurmd logs on the execution host where the job ran.

--nate

On Thu, Jun 15, 2017 at 11:47 AM, Hoover , David (NIH/CIT) [E] <[hidden email]> wrote:
I would guess something about the slurm job exceeded some allocated resource (memory, cpu, time) and slurm killed the job.

David Hoover
HPC @ NIH

On Jun 15, 2017, at 11:28 AM, Nate Coraor <[hidden email]> wrote:

Hi Evan,

Are there any other details logged for this job?

--nate

On Thu, Jun 15, 2017 at 9:20 AM, evan clark <[hidden email]> wrote:
Has anyone ever encountered an error such as this when running galaxy with slurm and submitting files for upload and unzip.

slurmstepd: get_exit_code task 0 died by signal

___________________________________________________________
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___________________________________________________________
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___________________________________________________________
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