Galaxy stable not working on MAC OSX, but default is OK

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Galaxy stable not working on MAC OSX, but default is OK

Bernardo Bello
Hi,

Seems I have some problems to run Galaxy stable. Here is the output I receive when running run.sh.

Thanks for your help, Bernardo

------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------------

Bernardos-MacBook-Pro:galaxy-central bernardo$ hg update stable
622 files updated, 0 files merged, 158 files removed, 0 files unresolved
Bernardos-MacBook-Pro:galaxy-central bernardo$ sh run.sh
Traceback (most recent call last):
  File "./scripts/paster.py", line 33, in <module>
    serve.run()
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 1049, in run
    invoke(command, command_name, options, args[1:])
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 1055, in invoke
    exit_code = runner.run(args)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 220, in run
    result = self.command()
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 643, in command
    app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp
    return loadobj(APP, uri, name=name, **kw)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 374, in loadobj
    global_conf=global_conf)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 399, in loadcontext
    global_conf=global_conf)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 423, in _loadconfig
    return loader.get_context(object_type, name, global_conf)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 561, in get_context
    section)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 620, in _context_from_explicit
    value = import_string(found_expr)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 125, in import_string
    return pkg_resources.EntryPoint.parse("x=" + s).load(False)
  File "/Users/bernardo/galaxy-central/lib/pkg_resources.py", line 1954, in load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
  File "/Users/bernardo/galaxy-central/lib/galaxy/web/__init__.py", line 4, in <module>
    from framework import expose
  File "/Users/bernardo/galaxy-central/lib/galaxy/web/framework/__init__.py", line 41, in <module>
    from babel.support import Translations
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/support.py", line 29, in <module>
    from babel.dates import format_date, format_datetime, format_time, LC_TIME
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/dates.py", line 34, in <module>
    LC_TIME = default_locale('LC_TIME')
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/core.py", line 642, in default_locale
    return '_'.join(filter(None, parse_locale(locale)))
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/core.py", line 763, in parse_locale
    raise ValueError('expected only letters, got %r' % lang)
ValueError: expected only letters, got 'utf-8'


--

Bernardo Bello Ortí

PhD student

CReSA-IRTA

Campus de Bellaterra-Universitat Autònoma de Barcelona

Edifici CReSA

08193  Bellaterra (Barcelona, Spain)

Tel.: 647 42 52 63 www.cresa.es  




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Re: Galaxy stable not working on MAC OSX, but default is OK

Bernardo Bello
This problem has already been reported and solved.



2014-04-12 12:50 GMT+02:00 Bernardo Bello <[hidden email]>:
Hi,

Seems I have some problems to run Galaxy stable. Here is the output I receive when running run.sh.

Thanks for your help, Bernardo

------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------------

Bernardos-MacBook-Pro:galaxy-central bernardo$ hg update stable
622 files updated, 0 files merged, 158 files removed, 0 files unresolved
Bernardos-MacBook-Pro:galaxy-central bernardo$ sh run.sh
Traceback (most recent call last):
  File "./scripts/paster.py", line 33, in <module>
    serve.run()
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 1049, in run
    invoke(command, command_name, options, args[1:])
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 1055, in invoke
    exit_code = runner.run(args)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 220, in run
    result = self.command()
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line 643, in command
    app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp
    return loadobj(APP, uri, name=name, **kw)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 374, in loadobj
    global_conf=global_conf)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 399, in loadcontext
    global_conf=global_conf)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 423, in _loadconfig
    return loader.get_context(object_type, name, global_conf)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 561, in get_context
    section)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 620, in _context_from_explicit
    value = import_string(found_expr)
  File "/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py", line 125, in import_string
    return pkg_resources.EntryPoint.parse("x=" + s).load(False)
  File "/Users/bernardo/galaxy-central/lib/pkg_resources.py", line 1954, in load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
  File "/Users/bernardo/galaxy-central/lib/galaxy/web/__init__.py", line 4, in <module>
    from framework import expose
  File "/Users/bernardo/galaxy-central/lib/galaxy/web/framework/__init__.py", line 41, in <module>
    from babel.support import Translations
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/support.py", line 29, in <module>
    from babel.dates import format_date, format_datetime, format_time, LC_TIME
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/dates.py", line 34, in <module>
    LC_TIME = default_locale('LC_TIME')
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/core.py", line 642, in default_locale
    return '_'.join(filter(None, parse_locale(locale)))
  File "/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/core.py", line 763, in parse_locale
    raise ValueError('expected only letters, got %r' % lang)
ValueError: expected only letters, got 'utf-8'


--

Bernardo Bello Ortí

PhD student

CReSA-IRTA

Campus de Bellaterra-Universitat Autònoma de Barcelona

Edifici CReSA

08193  Bellaterra (Barcelona, Spain)

Tel.: 647 42 52 63 www.cresa.es  






--

Bernardo Bello Ortí

PhD student

CReSA-IRTA

Campus de Bellaterra-Universitat Autònoma de Barcelona

Edifici CReSA

08193  Bellaterra (Barcelona, Spain)

Tel.: 647 42 52 63 www.cresa.es  




___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/