galaxy.jobs.runners.drmaa DEBUG 2014-10-29 14:45:54,777 (15)
galaxy.jobs.runners.drmaa DEBUG 2014-10-29 14:45:54,783 (15)
submitting with credentials: tjg [uid: 28369]
galaxy.jobs.runners ERROR 2014-10-29 14:45:54,784 (15) Unhandled
exception calling queue_job
Traceback (most recent call last):
File "/galaxy/lib/galaxy/jobs/runners/__init__.py", line 96, in run_next
File "/galaxy/lib/galaxy/jobs/runners/drmaa.py", line 189, in queue_job
filename = self.store_jobtemplate(job_wrapper, jt)
File "/galaxy/lib/galaxy/jobs/runners/drmaa.py", line 348, in
f = open(filename,'w')
IOError: [Errno 2] No such file or directory: '/galaxy/database/pbs/15.jt_json'
My /var/log/messages file is not reporting any attempt to run "sudo",
so I think the process is failing before it gets to that point in the
If I comment out the "drmaa_external_*" lines, the jobs are submitted
successfully and run as the "galaxy" user.
What am I missing here? :)
[hidden email] 831-459-5354
Baskin Engineering, Room 313A
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